{"id":166,"date":"2016-09-26T12:27:47","date_gmt":"2016-09-26T04:27:47","guid":{"rendered":"http:\/\/140.109.28.108\/brcasngscore\/?page_id=166"},"modified":"2025-10-28T16:57:04","modified_gmt":"2025-10-28T08:57:04","slug":"faqs","status":"publish","type":"page","link":"https:\/\/ngs.biodiv.tw\/NGSCore\/faqs\/","title":{"rendered":"FAQs"},"content":{"rendered":"\t\t<div data-elementor-type=\"wp-page\" data-elementor-id=\"166\" class=\"elementor elementor-166\">\n\t\t\t\t\t\t<section class=\"elementor-section elementor-top-section elementor-element elementor-element-213e elementor-section-boxed elementor-section-height-default elementor-section-height-default\" data-id=\"213e\" data-element_type=\"section\" data-e-type=\"section\">\n\t\t\t\t\t\t<div class=\"elementor-container elementor-column-gap-default\">\n\t\t\t\t\t<div class=\"elementor-column elementor-col-100 elementor-top-column elementor-element elementor-element-3b9f\" data-id=\"3b9f\" data-element_type=\"column\" data-e-type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-6bee59e elementor-widget elementor-widget-heading\" data-id=\"6bee59e\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"heading.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t<h2 class=\"elementor-heading-title elementor-size-default\">Administration<\/h2>\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-4ec elementor-widget elementor-widget-text-editor\" data-id=\"4ec\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<ol><li><span style=\"letter-spacing: 0.2px; font-size: 12pt; font-weight: bold;\"> <a href=\"https:\/\/ngs.biodiv.tw\/NGSCore\/service-flow\/\" rel=\"\">How do I get started working with the NGS services?<\/a> <a href=\"https:\/\/ngs.biodiv.tw\/NGSCore\/wp-content\/uploads\/Documents\/NGS_Core_LIMS_UserManual_181030.pdf\">(User Manual)<\/a> <\/span><\/li><li><span style=\"letter-spacing: 0.2px; font-size: 12pt; font-weight: bold;\"> <a href=\"https:\/\/ngs.biodiv.tw\/NGSCore\/faq-fill-out-the-forms-on-lims\/\" rel=\"\">How do I fill out the forms on NGS Core LIMS?<\/a> <\/span><\/li><li><span style=\"letter-spacing: 0.2px; font-size: 12pt; font-weight: bold;\"> <a href=\"https:\/\/ngs.biodiv.tw\/NGSCore\/faq-download-sequencing-data-on-sftp\/\" rel=\"\">How do I download my sequencing data?<\/a> <\/span><\/li><li><span style=\"letter-spacing: 0.2px; font-size: 12pt; font-weight: bold;\"> <a href=\"https:\/\/ngs.biodiv.tw\/NGSCore\/billing-procedures\/\">How do I pay my fees? (Billing Procedures)<\/a> <\/span><\/li><li><span style=\"letter-spacing: 0.2px; font-size: 12pt; font-weight: bold;\"><a href=\"https:\/\/ngs.biodiv.tw\/NGSCore\/wp-content\/uploads\/2025\/10\/\u6a23\u672c\u88fd\u5099\u98a8\u96aa\u544a\u77e5\u540c\u610f\u66f8_v7.docx\" target=\"_blank\" rel=\"noopener\">\u300a\u6a23\u672c\u88fd\u5099\u98a8\u96aa\u544a\u77e5\u540c\u610f\u66f8\u300b<\/a><a href=\"https:\/\/ngs.biodiv.tw\/NGSCore\/wp-content\/uploads\/2025\/05\/\u6a23\u672c\u88fd\u5099\u98a8\u96aa\u544a\u77e5\u540c\u610f\u66f8_Turbo_v4.docx\"><span style=\"text-decoration: underline;\">(Turbo DNase ver.)<\/span><\/a><\/span><\/li><li><a href=\"https:\/\/ngs.biodiv.tw\/NGSCore\/wp-content\/uploads\/2025\/03\/Index-Sheet-for-Ready-to-Seq-Library-V2.xlsx\"><strong>(S-L) Index Sheet for Ready-to-Seq Library\u00a0<\/strong><\/a><\/li><li><strong><a href=\"https:\/\/ngs.biodiv.tw\/NGSCore\/key-performance-parameters-for-illumina-sequencing-system\/\" target=\"_blank\" rel=\"noopener\">Performance parameters for Illumina Sequencing System<\/a><\/strong><\/li><\/ol>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-e147e4b elementor-widget elementor-widget-heading\" data-id=\"e147e4b\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"heading.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t<h2 class=\"elementor-heading-title elementor-size-default\">Experiment Related<\/h2>\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-6d814dc elementor-widget elementor-widget-text-editor\" data-id=\"6d814dc\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<ol>\n<li><span style=\"letter-spacing: 0.2px; font-size: 12pt; font-weight: bold;\">\n    <a href=\"https:\/\/sapac.support.illumina.com\/downloads\/index-adapters-pooling-guide-1000000041074.html\" >How to select index for illumina sequencing?<\/a> <\/span><\/li>\n<li><span style=\"letter-spacing: 0.2px; font-size: 12pt; font-weight: bold;\">\n    <a href=\"https:\/\/www.illumina.com\/content\/dam\/illumina-marketing\/documents\/products\/whitepapers\/index-hopping-white-paper-770-2017-004.pdf\" >Index hopping issue on patterned flowcells<\/a>\u00a0and \n    <a href=\"https:\/\/www.illumina.com\/techniques\/sequencing\/ngs-library-prep\/multiplexing\/index-hopping.html\" >methods of mitigation. <\/a> (NextSeq2000 \/ iSeq)<\/span><\/li>\n<li><span style=\"letter-spacing: 0.2px; font-size: 12pt; font-weight: bold;\">\n    <a href=\"https:\/\/emea.illumina.com\/search.html?q=library%20prep&amp;filter=manuals&amp;p=1\" >Commonly used Illumina library prep kits and protocols.<\/a> <\/span><\/li>\n<li><span style=\"letter-spacing: 0.2px; font-size: 12pt; font-weight: bold;\">\n    <a href=\"https:\/\/support.illumina.com\/downloads\/illumina-adapter-sequences-document-1000000002694.html\">Illumina Adapter Sequences<\/a>\n    <ul style=\"letter-spacing: 0.2px; font-size: 10pt;\"><a href=\"https:\/\/ngs.biodiv.tw\/NGSCore\/wp-content\/uploads\/Documents\/illumina-adapter-sequences-1000000002694-08.pdf\" >v1, Nextera UD Indexes (p.24)<\/a><\/ul>\n    <ul style=\"letter-spacing: 0.2px; font-size: 10pt;\"><a href=\"https:\/\/support-docs.illumina.com\/SHARE\/AdapterSequences\/Content\/SHARE\/AdapterSeq\/Illumina_DNA\/IDTIlluminaUDIndexes.htm\" >v2, IDT for Illumina UD Indexes<\/a><\/ul>\n    <ul style=\"letter-spacing: 0.2px; font-size: 10pt;\"><a href=\"https:\/\/support-docs.illumina.com\/SHARE\/AdapterSequences\/Content\/SHARE\/AdapterSeq\/Illumina_DNA\/IlluminaUDIndexes.htm\" >v3, Illumina Unique Dual Indexes<\/a><\/ul>\n    <\/span><\/li>\n<li><span style=\"letter-spacing: 0.2px; font-size: 12pt; font-weight: bold;\">RNA-seq data processing: HTSream and FASTP<br \/>\n    <ul style=\"letter-spacing: 0.2px; font-size: 10pt;\">\n    <a href=\"https:\/\/dnatech.genomecenter.ucdavis.edu\/faqs\/why-does-fastqc-show-unexpectedly-high-sequence-duplication-levels-pcr-duplicates\/\">Why does FASTQC show unexpectedly high sequence duplication levels (PCR-duplicates)?<br \/>(From UC Davis Genome Center)<\/a> \n    <\/ul>\n    <\/span><\/li>\n<li><span style=\"letter-spacing: 0.2px; font-size: 12pt; font-weight: bold;\">\n    <a href=\"https:\/\/ngs.biodiv.tw\/NGSCore\/?p=3006&amp;preview=true\">Adaptor trimming for TruSeq DNA Methylation<\/a> <\/span><\/li>\n<li><span style=\"letter-spacing: 0.2px; font-size: 12pt; font-weight: bold;\">Illumina PhiX control is \n    <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/nuccore\/9626372\" >GI:9626372 RefSeq:NC_001422.<\/a> <\/span><\/li>\n<li><span style=\"letter-spacing: 0.2px; font-size: 12pt; font-weight: bold;\">\n    <a href=\"https:\/\/ngs.biodiv.tw\/NGSCore\/wp-content\/uploads\/2023\/09\/Illumina-amplicon-seq-with-Nextera-overhang.pdf\" >Amplicon-seq design for Illumina library architecture<\/a> <\/span><\/li>\n<li><span style=\"letter-spacing: 0.2px; font-size: 12pt; font-weight: bold;\">\n    <a href=\"https:\/\/www.illumina.com\/science\/technology\/next-generation-sequencing\/sequencing-technology\/2-channel-sbs.html\">Illumina Chemistry and imaging<\/a> <\/span><\/li>\n<\/ol>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<section class=\"elementor-section elementor-top-section elementor-element elementor-element-cf26cdc elementor-section-boxed elementor-section-height-default elementor-section-height-default\" data-id=\"cf26cdc\" data-element_type=\"section\" data-e-type=\"section\">\n\t\t\t\t\t\t\t<div class=\"elementor-background-overlay\"><\/div>\n\t\t\t\t\t\t\t<div class=\"elementor-container elementor-column-gap-default\">\n\t\t\t\t\t<div class=\"elementor-column elementor-col-100 elementor-top-column elementor-element elementor-element-6a851d6\" data-id=\"6a851d6\" data-element_type=\"column\" data-e-type=\"column\">\n\t\t\t<div class=\"elementor-widget-wrap elementor-element-populated\">\n\t\t\t\t\t\t<div class=\"elementor-element elementor-element-dea2b2f elementor-widget-divider--view-line elementor-widget elementor-widget-divider\" data-id=\"dea2b2f\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"divider.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t<div class=\"elementor-divider\">\n\t\t\t<span class=\"elementor-divider-separator\">\n\t\t\t\t\t\t<\/span>\n\t\t<\/div>\n\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<\/div>\n\t\t","protected":false},"excerpt":{"rendered":"<p>Administration How do I get started working with the NG [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-166","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/ngs.biodiv.tw\/NGSCore\/wp-json\/wp\/v2\/pages\/166","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/ngs.biodiv.tw\/NGSCore\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/ngs.biodiv.tw\/NGSCore\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/ngs.biodiv.tw\/NGSCore\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/ngs.biodiv.tw\/NGSCore\/wp-json\/wp\/v2\/comments?post=166"}],"version-history":[{"count":265,"href":"https:\/\/ngs.biodiv.tw\/NGSCore\/wp-json\/wp\/v2\/pages\/166\/revisions"}],"predecessor-version":[{"id":6407,"href":"https:\/\/ngs.biodiv.tw\/NGSCore\/wp-json\/wp\/v2\/pages\/166\/revisions\/6407"}],"wp:attachment":[{"href":"https:\/\/ngs.biodiv.tw\/NGSCore\/wp-json\/wp\/v2\/media?parent=166"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}