{"id":106,"date":"2016-09-26T11:17:28","date_gmt":"2016-09-26T03:17:28","guid":{"rendered":"http:\/\/140.109.28.108\/brcasngscore\/?page_id=106"},"modified":"2026-02-10T15:37:20","modified_gmt":"2026-02-10T07:37:20","slug":"publications","status":"publish","type":"page","link":"https:\/\/ngs.biodiv.tw\/NGSCore\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"\t\t
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Please support us by sharing your publications<\/a><\/span>. Thank you!<\/strong><\/span><\/p>

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If you use data from our sequencing services in your publication, we’d really appreciate it if you could mention the NGS core facility in the acknowledgements<\/a>.<\/p>

2026<\/span><\/strong><\/h1>\n\n\n\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t
Allen, G.J.P., Yan, J.J., Kuan, P.L., Hayasaka, O., Hsu, S.C., Lu, M.J., Anraku, K., Wu, G.C., and Tseng, Y.C. (2026).
\n Neurometabolic rewiring in squid (Sepioteuthis lessoniana) optic lobes drives behavioral plasticity and visual integration under environmental acidification.
\nCommun Biol, 10.1038\/s42003-025-09506-6.
\nhttps:\/\/www.ncbi.nlm.nih.gov\/pubmed\/41507430\/<\/a><\/td>\n<\/tr>\n
Lin, C.-h., Chiou, K.-d., Lee, S.-r., Shih, P.-y., Lee, C.-r., and Lin, Y.-r. (2026).
\n The genetic diversity of mango (Mangifera indica L.) germplasm in Taiwan by high-throughput single-nucleotide polymorphism genotyping.
\nPLANTS, PEOPLE, PLANET 8, 301-315,
\nhttps:\/\/doi.org\/10.1002\/ppp3.70080\/<\/a><\/td>\n<\/tr>\n
Vianello, S.D., Lin, C.Y., Pinem, W.C., Li, H.R., Li, K.L., Sonia, G., Lee, S.H., Wu, S.K., Laudet, V., Su, Y.H., et al. (2026).
\n Comparative transcriptomics reveal the common anteroposterior molecular blueprint of adult bilaterian guts.
\nPlos Biol 24, e3003571, 10.1371\/journal.pbio.3003571.
\nhttps:\/\/www.ncbi.nlm.nih.gov\/pubmed\/41490069\/<\/a><\/td>\n<\/tr>\n
Wye-Lup Kong, Yi-Hsuan Chang, Wei-Nan Chen, Yi-Fu Wang, Dong-Yen Tsai, Wen-Yu Chen, Fang-Ju Chang, I-Ying Lin2, Ming-Tsan Liu, Wan-Chen Hsieh, Yi-Hua Chen1, Yi-Shiuan Tzeng, Szu-Teng Ma, Kai-Hsuan Ding, Chih-Heng Huang, Chun-Che Liao, Jian-Jong Liang, Yu-Chi Chou, An-Yu Chen, Jia-Tsrong Jan, Yen-Chen Chen, Deepa Sridharan, Takashi Angata, Yi-Ling Lin, Shih-Yu Chen, Mei-Yeh Jade Lu and Kuo-I Lin. 2026. Unraveling the immune landscape and molecular signatures of antibody-dependent cellular cytotoxicity in SARS-CoV-2 clearance. Current Biology (in revision)<\/td>\n<\/tr>\n
Wye-Lup Kong, Chi-Chih Wu, Yi-Hua Chen, Jeng-Yi Li, Kai-Hsuan Ding, Yi-Chen Li, Yao-Ming Chang, Wen-Hsiung Li*, and Mei-Yeh Jade Lu*
\nProfiling maize embryonic leaf development and discovering new genes by high-resolution spatial long-read isoform sequencing. 2026 (in review)<\/td>\n<\/tr>\n
Vianello, S.D., Lin, C.Y., Pinem, W.C., Li, H.R., Li, K.L., Sonia, G., Lee, S.H., Wu, S.K., Laudet, V., Su, Y.H., et al. (2026).
\n Comparative transcriptomics reveal the common anteroposterior molecular blueprint of adult bilaterian guts.
\nPlos Biol 24, e3003571, 10.1371\/journal.pbio.3003571.
\nhttps:\/\/www.ncbi.nlm.nih.gov\/pubmed\/41490069\/<\/a><\/td>\n<\/tr>\n
Wu, C.-C., Larsson, L., Hsieh, K.-T., Yu, C.-P., Chen, Y.-H., Ding, K.-H., Yang, H.-C., Lundeberg, J., Ho, C.-M.K., Wu, S.-H., et al. (2026).
\n Serial Spatial Transcriptomes Reveal Regulatory Transitions in Maize Leaf Development.
\nPlant Biotechnol J n\/a, https:\/\/doi.org\/10.1111\/pbi.70515.
\nhttps:\/\/doi.org\/10.1111\/pbi.70515\/<\/a><\/td>\n<\/tr>\n
Chen, C.-W., Yoneoka, K., Hori, K., Fujiwara, T., Van Do, T., Murakami, N., Huang, Y.-M., Chen, K.-H., Ebihara, A., and Chung, K.-F. (2026).
\n Life phases integration uncovers long-lived gametophytes mediated reticulate evolution in Haplopteris (Pteridaceae).
\nNew Phytologist n\/a, https:\/\/doi.org\/10.1111\/nph.70953.
\nhttps:\/\/doi.org\/10.1111\/nph.70953\/<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

2025<\/span><\/strong><\/h1>

\n\n\n\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t
Parada, C.M., Yan, C.S., Hung, C.Y., Tu, I.P., Hsu, C.P., and Shih, Y.L. (2025).
\n Growth-dependent concentration gradient of the oscillating Min system in Escherichia coli.
\nJ Cell Biol 224, 10.1083\/jcb.202406107.
\nhttps:\/\/www.ncbi.nlm.nih.gov\/pubmed\/39621132.<\/a><\/td>\n<\/tr>\n
Wang, P.H., Wu, T.Y., Chen, Y.L., Gicana, R.G., Lee, T.H., Chen, M.J., Hsiao, T.H., Lu, M.J., Lai, Y.L., Wang, T.Y., et al. (2025).
\n Bacterial estrogenesis without oxygen: Wood-Ljungdahl pathway likely contributed to the emergence of estrogens in the biosphere.
\nProc Natl Acad Sci U S A 122, e2422930122, 10.1073\/pnas.2422930122.
\nhttps:\/\/www.ncbi.nlm.nih.gov\/pubmed\/40053361<\/a><\/td>\n<\/tr>\n
Lin, C.P., Lin, Y.F., Liu, Y.C., Lu, M.Y.J., Ke, H.M., and Tsai, I.J. (2025).
\nSpatiotemporal dynamics reveal high turnover and contrasting assembly processes in fungal communities across contiguous habitats of tropical forests.
\nEnviron Microbiome 20, ARTN 23
\n10.1186\/s40793-025-00683-9.
\nhttps:\/\/pubmed.ncbi.nlm.nih.gov\/39955594\/<\/a><\/td>\n<\/tr>\n
Lu, C.-Y., Chang, Y.-P., Pi\u00f1on-Gonzalez, V.M., Lewin, T.D., Shih, K.-N., Chuang, P.-S., Wada, N., Yu, S.-P., Yu, Z.-R., Chen, Y.-H., et al. (2025).
\n Microbial profiling and single-cell transcriptomics reveal probiotic mechanisms of coral thermal resilience.
\nbioRxiv, 2025.2009.2002.673423, 10.1101\/2025.09.02.673423.
\n http:\/\/biorxiv.org\/content\/early\/2025\/09\/03\/2025.09.02.673423.abstract
\nhttp:\/\/biorxiv.org\/content\/early\/2025\/09\/03\/2025.09.02.673423.abstract<\/a><\/td>\n<\/tr>\n
Lee, Y.-C., Shen, Z.-Y., Lin, W.-R., Wang, T.-Y., Liu, M., Yeh, Y.-C., Chan, S.-F., Lu, M.-Y.J., Wang, H.-Y., Liao, L.-Y., et al. (2025).
\n Eco-genomic analysis uncovers precision-conservation targets for the western Pacific\u2019s southernmost salmonid.
\nbioRxiv, 2025.2009.2009.675276, 10.1101\/2025.09.09.675276.
\nhttps:\/\/biorxiv.org\/content\/early\/2025\/09\/15\/2025.09.09.675276.abstract
\nhttps:\/\/biorxiv.org\/content\/early\/2025\/09\/15\/2025.09.09.675276.abstract<\/a><\/td>\n<\/tr>\n
Nishino, T., Moriyama, M., Mukai, H., Tanahashi, M., Hosokawa, T., Chang, H.Y., Tachikawa, S., Nikoh, N., Koga, R., Kuo, C.H., and Fukatsu, T. (2025).
\n Defensive fungal symbiosis on insect hindlegs.
\nScience 390, 279-283, 10.1126\/science.adp6699.
\nhttps:\/\/www.ncbi.nlm.nih.gov\/pubmed\/41100614
\nhttps:\/\/www.ncbi.nlm.nih.gov\/pubmed\/41100614<\/a><\/td>\n<\/tr>\n
Lewin, T.D., Sakagami, T., Kao, L.-J., Liao, I.J.-Y., Chiu, Y.-L., Pi\u00f1on-Gonzalez, V.M., Li, J.-Y., Tin, K.-X., Lu, M.-Y.J., Endo, K., et al. (2025).
\nPhoronid genome supports a monophyletic Lophophorata.
\nhttps:\/\/doi.org\/10.5281\/zenodo.15322498.
\nhttps:\/\/doi.org\/10.5281\/zenodo.15322498<\/a><\/td>\n<\/tr>\n
Wye-Lup Kong, Chi-Chih Wu, Yi-Hua Chen, Jeng-Yi Li, Kai-Hsuan Ding, Yao-Ming Chang3, Wen-Hsiung Li*, and Mei-Yeh Jade Lu*. (2025).
\nProfiling maize embryonic leaf development and discovering new genes by high-resolution spatial long-read isoform sequencing.
\n(in review)<\/td>\n<\/tr>\n
Wang, P.H., Wu, T.Y., Chen, Y.L., Gicana, R.G., Lee, T.H., Chen, M.J., Hsiao, T.H., Lu, M.Y.J., Lai, Y.L., Wang, T.Y., et al. (2025).
\n Bacterial estrogenesis without oxygen: Wood-Ljungdahl pathway likely contributed to the emergence of estrogens in the biosphere.
\nP Natl Acad Sci USA 122, ARTN e2422930122
\n10.1073\/pnas.2422930122.
\nhttps:\/\/pubmed.ncbi.nlm.nih.gov\/40053361\/<\/a>
\n<\/td>\n<\/tr>\n
Chen, C.C., Xie, Q.Y., Chuang, P.S., Darnajoux, R., Chien, Y.Y., Wang, W.H., Tian, X.J., Tu, C.H., Chen, B.C., Tang, S.L., and Chen, K.H. (2025).
\n A thallus-forming N-fixing fungus-cyanobacterium symbiosis from subtropical forests.
\nScience Advances 11, ARTN eadt4093
\n10.1126\/sciadv.adt4093.
\nhttps:\/\/pubmed.ncbi.nlm.nih.gov\/39937913\/<\/a><\/td>\n<\/tr>\n
Hsu, P.C., Lin, C.Y., Hsieh, P.H., Chuang, W.H., Lu, M.Y., Chen, C.A., and Chen, S.H. (2025).
\n Chromosome-Level Genome Assembly and Annotation of the Japanese Cutlassfish (Trichiurus japonicus): A High-Quality Genomic Resource Featuring Nuclear and Mitochondrial Completeness for Future Studies.
\nSci Data 12, 1860, 10.1038\/s41597-025-06112-3.
\nhttps:\/\/www.ncbi.nlm.nih.gov\/pubmed\/41271797\/<\/a><\/td>\n<\/tr>\n
Lewin, T.D., Sakagami, T., Kao, L.J., Liao, I.J., Chiu, Y.L., Pinon-Gonzalez, V.M., Li, J.Y., Tin, K.X., Lu, M.J., Endo, K., et al. (2025).
\r\n Phoronid genome supports a monophyletic Lophophorata.
\r\nCurr Biol 35, 5633-5645 e5637, 10.1016\/j.cub.2025.10.020.
\r\nhttps:\/\/www.ncbi.nlm.nih.gov\/pubmed\/41205607\/<\/a><\/td>\n<\/tr>\n
Hsiao, Y.C., Shiue, S.Y., Yen, M.R., Lai, J.K., and Yamada, M. (2025).
\n The peptide hormone RGF1 modulates PLETHORA2 stability via reactive oxygen species-dependent regulation of a cysteine residue.
\nPlant Physiol 198, 10.1093\/plphys\/kiaf244.
\nhttps:\/\/www.ncbi.nlm.nih.gov\/pubmed\/40608788\/<\/a><\/td>\n<\/tr>\n
Hsiao, Y.-C., Lai, J.-K., Shiue, S.-Y., and Yamada, M. (2025).
\n Root meristem growth factor (RGF) peptide signaling as a molecular bridge between root development and non-lethal thermal stress adaptation.
\nbioRxiv.
\nhttps:\/\/www.biorxiv.org\/content\/10.1101\/2025.11.27.690926v1\/<\/a><\/td>\n<\/tr>\n
Klann, M., Miura, S., Lee, S.-H., Vianello, S.D., Ross, R., Watanabe, M., Gairin, E., Liang, Y., Hutto, H.W., McCluskey, B.M., et al. (2025).
\n Cell-cell communication as underlying principle governing color pattern formation in fishes.
\nbioRxiv.
\nhttps:\/\/doi.org\/10.1101\/2025.08.21.671633\/<\/a><\/td>\n<\/tr>\n
Reynaud, M., Vianello, S., Lee, S.H., Salis, P., Wu, K., Frederich, B., Lecchini, D., Besseau, L., Roux, N., and Laudet, V. (2025).
\n The multi-level effect of chlorpyrifos during clownfish metamorphosis.
\nMol Cell Endocrinol 603, 112535, 10.1016\/j.mce.2025.112535.
\nhttps:\/\/www.ncbi.nlm.nih.gov\/pubmed\/40187546\/<\/a><\/td>\n<\/tr>\n
Tai, J.-H., Yu, T.-H., Wang, F.-Y., Terai, Y., Tabata, R., Huang, S.-P., Wang, T.-Y., and Wang, H.-Y. (2025).
\n Chromosome-Level Genome Assembly of the Japanese Zacco platypus for Comparative Genomics.
\nScientific Data 13, 149, 10.1038\/s41597-025-06467-7.
\nhttps:\/\/doi.org\/10.1038\/s41597-025-06467-7\/<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/span><\/h1>

\u00a0<\/p>

2024<\/span><\/strong><\/h1>\n\n\n\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t
Wang, P.-H., Wu, T.-Y., Chen, Y.-L., Gicana, R.G., Lee, T.-H., Chen, M.-J., Hsiao, T.-H., Jade Lu, M.-Y., Lai, Y.-L., Wang, T.-Y., et al. (2024).
\n Aromatase-independent estrogenesis: Wood-Ljungdahl pathway likely contributed to the emergence of estrogens in the biosphere.
\nbioRxiv, 2024.2010.2024.619986, 10.1101\/2024.10.24.619986.
\nhttps:\/\/www.biorxiv.org\/content\/biorxiv\/early\/2024\/10\/24\/2024.10.24.619986<\/a><\/td>\n<\/tr>\n
Le, M.H., Morgan, B., Lu, M.Y., Moctezuma, V., Burgos, O., and Huang, J.P. (2024).
\n The genomes of Hercules beetles reveal putative adaptive loci and distinct demographic histories in pristine North American forests.
\nMol Ecol Resour 24, e13908, DOI: 10.1111\/1755-0998.13908.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38063363.<\/a><\/td>\n<\/tr>\n
Mattos, F.M.G., Dreyer, N., Fong, C.L., Wen, Y.V., Jain, D., De Vivo, M., Huang, Y.S., Mwihaki, J.K., Wang, T.Y., Ho, M.J., et al. (2024).
\n Potential PCR amplification bias in identifying complex ecological patterns: Higher species compositional homogeneity revealed in smaller-size coral reef zooplankton by metatranscriptomics.
\nMol Ecol Resour 24, e13911, DOI: 10.1111\/1755-0998.13911.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38063371.<\/a><\/td>\n<\/tr>\n
Kao, H.J., Lin, T.Y., Hsieh, F.J., Chien, J.Y., Yeh, E.C., Lin, W.J., Chen, Y.H., Ding, K.H., Yang, Y., Chi, S.C., et al. (2024).
\n Highly efficient capture approach for the identification of diverse inherited retinal disorders.
\nNPJ Genom Med 9, 4, DOI: 10.1038\/s41525-023-00388-3.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38195571.<\/a><\/td>\n<\/tr>\n
Kao, H.J., Lin, T.Y., Hsieh, F.J., Chien, J.Y., Yeh, E.C., Lin, W.J., Chen, Y.H., Ding, K.H., Yang, Y., Chi, S.C., et al. (2024).
\n Highly efficient capture approach for the identification of diverse inherited retinal disorders.
\nNPJ Genom Med 9, 4, DOI: 10.1038\/s41525-023-00388-3.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38195571.<\/a><\/td>\n<\/tr>\n
Hung, Y.L., Hong, S.F., Wei, W.L., Cheng, S., Yu, J.Z., Tjita, V., Yong, Q.Y., Nishihama, R., Kohchi, T., Bowman, J., et al. (2024).
\n Dual regulation of cytochrome P450 gene expression by two distinct small RNAs, a novel tasiRNA and miRNA, in Marchantia polymorpha.
\nPlant Cell Physiol, DOI: 10.1093\/pcp\/pcae029.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38545690.<\/a><\/td>\n<\/tr>\n
Lin, M.D., Chuang, C.H., Kao, C.H., Chen, S.H., Wang, S.C., Hsieh, P.H., Chen, G.Y., Mao, C.C., Li, J.Y., Jade Lu, M.Y., and Lin, C.Y. (2024).
\n Decoding the genome of bloodsucking midge Forcipomyia taiwana (Diptera: Ceratopogonidae): Insights into odorant receptor expansion.
\nInsect Biochem Mol Biol 168, 104115, DOI: 10.1016\/j.ibmb.2024.104115.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38570118.<\/a><\/td>\n<\/tr>\n
Chan, Y.F., Lu, C.W., Kuo, H.C., and Hung, C.M. (2024).
\n A chromosome-level genome assembly of the Asian house martin implies potential genes associated with the feathered-foot trait.
\nG3 (Bethesda) 14, DOI: 10.1093\/g3journal\/jkae077.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38607414.<\/a><\/td>\n<\/tr>\n
Chang, Y.H., Hsu, M.F., Chen, W.N., Wu, M.H., Kong, W.L., Lu, M.J., Huang, C.H., Chang, F.J., Chang, L.Y., Tsai, H.Y., et al. (2024).
\n Functional and structural investigation of a broadly neutralizing SARS-CoV-2 antibody.
\nJCI Insight 9, DOI: 10.1172\/jci.insight.179726.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38775156.<\/a><\/td>\n<\/tr>\n
Hong, S.F., Wei, W.L., Pan, Z.J., Yu, J.Z., Cheng, S., Hung, Y.L., Tjita, V., Wang, H.C., Komatsu, A., Nishihama, R., et al. (2024).
\n Molecular Insights into MpAGO1 and Its Regulatory miRNA, miR11707, in the High-Temperature Acclimation of Marchantia polymorpha.
\nPlant Cell Physiol 65, 1414-1433, 10.1093\/pcp\/pcae080.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38988198.<\/a><\/td>\n<\/tr>\n
Reynaud, M., Vianello, S., Lee, S.-H., Salis, P., Wu, K., Frederich, B., Lecchini, D., Besseau, L., Roux, N., and Laudet, V. (2024).
\n The multi-level effect of chlorpyrifos during clownfish metamorphosis.
\nbioRxiv, 2024.2008.2002.606305, 10.1101\/2024.08.02.606305.
\n http:\/\/biorxiv.org\/content\/early\/2024\/09\/27\/2024.08.02.606305.abstract.<\/a><\/td>\n<\/tr>\n
Chou, C., Lin, C.Y., Lin, C.Y., Wang, A., Fan, T.P., Wang, K.T., Yu, J.K., and Su, Y.H. (2024).
\n Tracing the evolutionary origin of chordate somites in the hemichordate Ptychodera flava.
\nIntegr Comp Biol, 10.1093\/icb\/icae020.
\nhttps:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38637301.<\/a><\/td>\n<\/tr>\n
Lin, C.Y., Marletaz, F., Perez-Posada, A., Martinez-Garcia, P.M., Schloissnig, S., Peluso, P., Conception, G.T., Bump, P., Chen, Y.C., Chou, C., et al. (2024).
\n Chromosome-level genome assemblies of 2 hemichordates provide new insights into deuterostome origin and chromosome evolution.
\nPlos Biol 22, e3002661, 10.1371\/journal.pbio.3002661.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38829909.<\/a><\/td>\n<\/tr>\n
Su, P.A., Chang, C.H., Yen, S.B., Wu, H.Y., Tung, W.J., Hu, Y.P., Chen, Y.I., Lin, M.H., Shih, C., Chen, P.J., and Tsai, K. (2024).
\r\n Epitranscriptomic cytidine methylation of the hepatitis B viral RNA is essential for viral reverse transcription and particle production.
\r\nProc Natl Acad Sci U S A 121, e2400378121, 10.1073\/pnas.2400378121.
\r\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38830096.<\/a><\/td>\n<\/tr>\n
Lin, M.D., Chuang, C.H., Kao, C.H., Chen, S.H., Wang, S.C., Hsieh, P.H., Chen, G.Y., Mao, C.C., Li, J.Y., Jade Lu, M.Y., and Lin, C.Y. (2024).
\n Decoding the genome of bloodsucking midge Forcipomyia taiwana (Diptera: Ceratopogonidae): Insights into odorant receptor expansion.
\nInsect Biochem Mol Biol 168, 104115, 10.1016\/j.ibmb.2024.104115.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/38570118.<\/a><\/td>\n<\/tr>\n
Sun, P.-F., Lu, M.R., Liu, Y.-C., Shaw, B.J.P., Lin, C.-P., Chen, H.-W., Lin, Y.-f., Hoh, D.Z., Ke, H.-M., Wang, I.F., et al. (2024).
\n An acidophilic fungus promotes prey digestion in a carnivorous plant.
\nNat Microbiol 9, 2522-2537, 10.1038\/s41564-024-01766-y.
\nhttps:\/\/doi.org\/10.1038\/s41564-024-01766-y.
\nhttps:\/\/doi.org\/10.1038\/s41564-024-01766-y<\/a><\/td>\n<\/tr>\n
Chan, Y.F., Lu, C.W., Kuo, H.C., and Hung, C.M. (2024).
\n A chromosome-level genome assembly of the Asian house martin implies potential genes associated with the feathered-foot trait.
\nG3-Genes Genom Genet 14, ARTN jkae077
\n10.1093\/g3journal\/jkae077.
\nhttps:\/\/pubmed.ncbi.nlm.nih.gov\/38607414\/<\/a><\/td>\n<\/tr>\n
Lin, C.-P., Lin, Y.-F., Liu, Y.-C., Lu, M.-Y.J., Ke, H.-M., and Tsai, I.J. (2024).
\n Spatiotemporal dynamics and assembly process differ in fungal communities across contiguous habitats in tropical forests.
\nbioRxiv.
\nhttps:\/\/www.biorxiv.org\/content\/10.1101\/2024.09.20.614103v1\/<\/a><\/td>\n<\/tr>\n
Hsiao, Y.-C., Shiue, S.-Y., Yen, M.-R., Lai, J.-K., and Yamada, M. (2024).
\n RGF1 controls PLT2 protein stability through ROS-dependent regulation of a cysteine residue in root meristem development.
\nbioRxiv.
\nhttps:\/\/doi.org\/10.1101\/2024.04.08.588570\/<\/a><\/td>\n<\/tr>\n
P\u00e9rez-Posada, A., Lin, C.-Y., Fan, T.-P., Lin, C.-Y., Chen, Y.-C., G\u00f3mez-Skarmeta, J.L., Yu, J.-K., Su, Y.-H., and Tena, J.J. (2024).
\n Hemichordate cis-regulatory genomics and the gene expression dynamics of deuterostomes.
\nNature Ecology & Evolution 8, 2213-2227, 10.1038\/s41559-024-02562-x.
\nhttps:\/\/doi.org\/10.1038\/s41559-024-02562-x\/<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>

2023<\/span><\/strong><\/h1>\n\n\n\n\t\n\t\n\t\n\t\n\t\n\t\n\t
Lu, C.W., Huang, S.T., Cheng, S.J., Lin, C.T., Hsu, Y.C., Yao, C.T., Dong, F., Hung, C.M., and Kuo, H.C. (2023).
\n Genomic architecture underlying morphological and physiological adaptation to high elevation in a songbird.
\nMol Ecol 32, 2234-2251, DOI: 10.1111\/mec.16875.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36748940.<\/a><\/td>\n<\/tr>\n
De Vivo, M., Chen, W.Y., and Huang, J.P. (2023).
\n Testing the efficacy of different molecular tools for parasite conservation genetics: a case study using horsehair worms (Phylum: Nematomorpha).
\nParasitology 150, 842-851, DOI: 10.1017\/S0031182023000641.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37415562.<\/a><\/td>\n<\/tr>\n
Negi, A., Liao, B.Y., and Yeh, S.D. (2023).
\n Long-read-based Genome Assembly of Drosophila gunungcola Reveals Fewer Chemosensory Genes in Flower-breeding Species.
\nGenome Biol Evol 15, DOI: 10.1093\/gbe\/evad048.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36930539.<\/a><\/td>\n<\/tr>\n
Wei, K.H., Lin, I.T., Chowdhury, K., Lim, K.L., Liu, K.T., Ko, T.M., Chang, Y.M., Yang, K.C., and Lai, S.B. (2023).
\n Comparative single-cell profiling reveals distinct cardiac resident macrophages essential for zebrafish heart regeneration.
\nElife 12, DOI: 10.7554\/eLife.84679.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37498060.<\/a><\/td>\n<\/tr>\n
Kuo, H.C., Yao, C.T., Liao, B.Y., Weng, M.P., Dong, F., Hsu, Y.C., and Hung, C.M. (2023).
\n Weak gene-gene interaction facilitates the evolution of gene expression plasticity.
\nBMC Biol 21, 57, DOI: 10.1186\/s12915-023-01558-6.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36941675.<\/a><\/td>\n<\/tr>\n
Lee, C.Y., Wang, J.F., Chang, C.H., and Tung, C.W. (2023).
\n Analyzing genomic variation in cultivated pumpkins and identification of candidate genes controlling seed traits.
\nPlant Genome 16, e20393, DOI: 10.1002\/tpg2.20393.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37776006.<\/a><\/td>\n<\/tr>\n
Tsai, C.H., Lai, A.C., Lin, Y.C., Chi, P.Y., Chen, Y.C., Yang, Y.H., Chen, C.H., Shen, S.Y., Hwang, T.L., Su, M.W., et al. (2023).
\n Neutrophil extracellular trap production and CCL4L2 expression influence corticosteroid response in asthma.
\nSci Transl Med 15, eadf3843, DOI: 10.1126\/scitranslmed.adf3843.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/37285400.<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

2022<\/span><\/strong><\/h1>\n\n\n\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t
Hsieh, D.K., Chuang, S.C., Chen, C.Y., Chao, Y.T., Lu, M.J., Lee, M.H., and Shih, M.C. (2022).
\n Comparative Genomics of Three Colletotrichum scovillei Strains and Genetic Analysis Revealed Genes Involved in Fungal Growth and Virulence on Chili Pepper.
\nFront Microbiol 13, 818291, DOI: 10.3389\/fmicb.2022.818291.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35154058.<\/a><\/td>\n<\/tr>\n
Lu, S.H., Lee, K.Z., Hsu, P.W., Su, L.Y., Yeh, Y.C., Pan, C.Y., and Tsai, S.Y. (2022).
\n Alternative Splicing Mediated by RNA-Binding Protein RBM24 Facilitates Cardiac Myofibrillogenesis in a Differentiation Stage-Specific Manner.
\nCirc Res 130, 112-129, DOI: 10.1161\/CIRCRESAHA.121.320080.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34816743.<\/a><\/td>\n<\/tr>\n
Lopez, M.L.D., Lin, Y.Y., Sato, M., Hsieh, C.H., Shiah, F.K., and Machida, R.J. (2022).
\n Using metatranscriptomics to estimate the diversity and composition of zooplankton communities.
\nMol Ecol Resour 22, 638-652, DOI: 10.1111\/1755-0998.13506.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34555254.<\/a><\/td>\n<\/tr>\n
Chiu, Y.F., Fu, H.Y., Skotnicova, P., Lin, K.M., Komenda, J., and Chu, H.A. (2022).
\n Tandem gene amplification restores photosystem II accumulation in cytochrome b(559) mutants of cyanobacteria.
\nNew Phytol 233, 766-780, DOI: 10.1111\/nph.17785.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34625967.<\/a><\/td>\n<\/tr>\n
Yang, F.J., Chen, C.N., Chang, T., Cheng, T.W., Chang, N.C., Kao, C.Y., Lee, C.C., Huang, Y.C., Hsu, J.C., Li, J., et al. (2022).
\n phiC31 integrase for recombination-mediated single-copy insertion and genome manipulation in Caenorhabditis elegans.
\nGenetics 220, DOI: 10.1093\/genetics\/iyab206.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34791215.<\/a><\/td>\n<\/tr>\n
Lu, C.W., Yao, C.T., and Hung, C.M. (2022).
\n Domestication obscures genomic estimates of population history.
\nMol Ecol 31, 752-766, DOI: 10.1111\/mec.16277.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34779057.<\/a><\/td>\n<\/tr>\n
Lu, C.W., Yao, C.T., and Hung, C.M. (2022).
\n Domestication obscures genomic estimates of population history.
\nMol Ecol 31, 752-766, DOI: 10.1111\/mec.16277.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34779057.<\/a><\/td>\n<\/tr>\n
Yeh, S.Y., Lin, H.H., Chang, Y.M., Chang, Y.L., Chang, C.K., Huang, Y.C., Ho, Y.W., Lin, C.Y., Zheng, J.Z., Jane, W.N., et al. (2022).
\n Maize Golden2-like transcription factors boost rice chloroplast development, photosynthesis, and grain yield.
\nPlant Physiol 188, 442-459, DOI: 10.1093\/plphys\/kiab511.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34747472.<\/a><\/td>\n<\/tr>\n
Huang, C.K., Lin, W.D., and Wu, S.H. (2022).
\n An improved repertoire of splicing variants and their potential roles in Arabidopsis photomorphogenic development.
\nGenome Biol 23, 50, DOI: 10.1186\/s13059-022-02620-2.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35139889.<\/a><\/td>\n<\/tr>\n
Yang, C.L., Huang, Y.T., Schmidt, W., Klein, P., Chan, M.T., and Pan, I.C. (2022).
\n Ethylene Response Factor109 Attunes Immunity, Photosynthesis, and Iron Homeostasis in Arabidopsis Leaves.
\nFront Plant Sci 13, 841366, DOI: 10.3389\/fpls.2022.841366.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35310669.<\/a><\/td>\n<\/tr>\n
Lee, T.J., Liu, Y.C., Liu, W.A., Lin, Y.F., Lee, H.H., Ke, H.M., Huang, J.P., Lu, M.J., Hsieh, C.L., Chung, K.F., et al. (2022).
\n Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of predomesticated lineages.
\nGenome Res 32, 864-877, DOI: 10.1101\/gr.276286.121.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35361625.<\/a><\/td>\n<\/tr>\n
Lee, T.J., Liu, Y.C., Liu, W.A., Lin, Y.F., Lee, H.H., Ke, H.M., Huang, J.P., Lu, M.J., Hsieh, C.L., Chung, K.F., et al. (2022).
\n Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of predomesticated lineages.
\nGenome Res 32, 864-877, DOI: 10.1101\/gr.276286.121.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35361625.<\/a><\/td>\n<\/tr>\n
Cho, H.Y., Chou, M.Y., Ho, H.Y., Chen, W.C., and Shih, M.C. (2022).
\n Ethylene modulates translation dynamics in Arabidopsis under submergence via GCN2 and EIN2.
\nSci Adv 8, eabm7863, DOI: 10.1126\/sciadv.abm7863.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35658031.<\/a><\/td>\n<\/tr>\n
Ng, C.S., Lai, C.K., Ke, H.M., Lee, H.H., Chen, C.F., Tang, P.C., Cheng, H.C., Lu, M.J., Li, W.H., and Tsai, I.J. (2022).
\n Genome Assembly and Evolutionary Analysis of the Mandarin Duck Aix galericulata Reveal Strong Genome Conservation among Ducks.
\nGenome Biology and Evolution 14, ARTN evac083
\nhttps:\/\/doi.org\/10.1093\/gbe\/evac083<\/a><\/td>\n<\/tr>\n
Chang, Y.J., Kang, Z., Bei, J., Chou, S.J., Lu, M.J., Su, Y.L., Lin, S.W., Wang, H.H., Lin, S., and Chang, C.J. (2022).
\n Generation of TRIM28 Knockout K562 Cells by CRISPR\/Cas9 Genome Editing and Characterization of TRIM28-Regulated Gene Expression in Cell Proliferation and Hemoglobin Beta Subunits.
\nInt J Mol Sci 23, DOI: 10.3390\/ijms23126839.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35743282.<\/a><\/td>\n<\/tr>\n
Wada, N., Hsu, M.T., Tandon, K., Hsiao, S.S., Chen, H.J., Chen, Y.H., Chiang, P.W., Yu, S.P., Lu, C.Y., Chiou, Y.J., et al. (2022).
\n High-resolution spatial and genomic characterization of coral-associated microbial aggregates in the coral Stylophora pistillata.
\nSci Adv 8, eabo2431, DOI: 10.1126\/sciadv.abo2431.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35857470.<\/a><\/td>\n<\/tr>\n
Lo, K.L., Chen, Y.N., Chiang, M.Y., Chen, M.C., Panibe, J.P., Chiu, C.C., Liu, L.W., Chen, L.J., Chen, C.W., Li, W.H., and Wang, C.S. (2022).
\n Two genomic regions of a sodium azide induced rice mutant confer broad-spectrum and durable resistance to blast disease.
\nRice (N Y) 15, 2, DOI: 10.1186\/s12284-021-00547-z.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35006368.<\/a><\/td>\n<\/tr>\n
Liu, W.Y., Yu, C.P., Chang, C.K., Chen, H.J., Li, M.Y., Chen, Y.H., Shiu, S.H., Ku, M.S.B., Tu, S.L., Lu, M.J., and Li, W.H. (2022).
\n Regulators of early maize leaf development inferred from transcriptomes of laser capture microdissection (LCM)-isolated embryonic leaf cells.
\nProc Natl Acad Sci U S A 119, e2208795119, DOI: 10.1073\/pnas.2208795119.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36001691.<\/a><\/td>\n<\/tr>\n
Tsai, H.Y., Cheng, H.T., and Tsai, Y.T. (2022).
\n Biogenesis of C. elegans spermatogenesis small RNAs is initiated by a zc3h12a-like ribonuclease.
\nSci Adv 8, eabm0699, DOI: 10.1126\/sciadv.abm0699.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35947655.<\/a><\/td>\n<\/tr>\n
Chuang, C.R., Hsieh, C.L., Chang, C.S., Wang, C.M., Tandang, D.N., Gardner, E.M., Audi, L., Zerega, N.J.C., and Chung, K.F. (2022).
\n Amis Pacilo and Yami Cipoho are not the same as the Pacific breadfruit starch crop-Target enrichment phylogenomics of a long-misidentified Artocarpus species sheds light on the northward Austronesian migration from the Philippines to Taiwan.
\nPLoS One 17, e0272680, DOI: 10.1371\/journal.pone.0272680.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36178903.<\/a><\/td>\n<\/tr>\n
Chou, C.H., Lin, H.S., Wen, C.H., and Tung, C.W. (2022).
\n Patterns of genetic variation and QTLs controlling grain traits in a collection of global wheat germplasm revealed by high-quality SNP markers.
\nBmc Plant Biol 22, 455, DOI: 10.1186\/s12870-022-03844-x.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36131260.<\/a><\/td>\n<\/tr>\n
Hsieh, C.L., Xu, W.B., and Chung, K.F. (2022).
\n Plastomes of limestone karst gesneriad genera Petrocodon and Primulina, and the comparative plastid phylogenomics of Gesneriaceae.
\nSci Rep 12, 15800, DOI: 10.1038\/s41598-022-19812-2.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/36138079.<\/a><\/td>\n<\/tr>\n
Yeh, H.-h., Chang, Y.-M., Chang, Y.-W., Lu, M.-Y.J., Chen, Y.-H., Lee, C.-C., and Chen, C.-C. (2022).
\n Multiomic analyses reveal enriched glycolytic processes in \u03b2-myosin heavy chain-expressed cardiomyocytes in early cardiac hypertrophy.
\nJournal of Molecular and Cellular Cardiology Plus 1, 100011, DOI: 10.1016\/j.jmccpl.2022.100011.
\n https:\/\/www.sciencedirect.com\/science\/article\/pii\/S2772976122000058.<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

2021<\/span><\/strong><\/h1>\n\n\n\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t
Tsai, S.Y., and Huang, F. (2021).
\n Acetyltransferase Enok regulates transposon silencing and piRNA cluster transcription.
\nPlos Genet 17, e1009349, DOI: 10.1371\/journal.pgen.1009349.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33524038.<\/a><\/td>\n<\/tr>\n
Lin, Y.F., Sung, C.M., Ke, H.M., Kuo, C.J., Liu, W.A., Tsai, W.S., Lin, C.Y., Cheng, H.T., Lu, M.J., Tsai, I.J., and Hsieh, S.Y. (2021).
\n The rectal mucosal but not fecal microbiota detects subclinical ulcerative colitis.
\nGut Microbes 13, 1-10, DOI: 10.1080\/19490976.2020.1832856.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33525983.<\/a><\/td>\n<\/tr>\n
Huang, C.F., Liu, W.Y., Lu, M.J., Chen, Y.H., Ku, M.S.B., and Li, W.H. (2021).
\n Whole-Genome Duplication Facilitated the Evolution of C4 Photosynthesis in Gynandropsis gynandra.
\nMol Biol Evol 38, 4715-4731, DOI: 10.1093\/molbev\/msab200.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34191030.<\/a><\/td>\n<\/tr>\n
Panibe, J.P., Wang, L., Li, J., Li, M.Y., Lee, Y.C., Wang, C.S., Ku, M.S.B., Lu, M.J., and Li, W.H. (2021).
\n Chromosomal-level genome assembly of the semi-dwarf rice Taichung Native 1, an initiator of Green Revolution.
\nGenomics 113, 2656-2674, DOI: 10.1016\/j.ygeno.2021.06.006.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34111524.<\/a><\/td>\n<\/tr>\n
Liu, H.H., Wang, J., Wu, P.H., Lu, M.J., Li, J.Y., Shen, Y.M., Tzeng, M.N., Kuo, C.H., Lin, Y.H., and Chang, H.X. (2021).
\n Whole-Genome Sequence Resource of Calonectria ilicicola, the Casual Pathogen of Soybean Red Crown Rot.
\nMol Plant Microbe Interact 34, 848-851, DOI: 10.1094\/MPMI-11-20-0315-A.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33683143.<\/a><\/td>\n<\/tr>\n
Li, Y.J., Wang, R.B., Lin, C.Y., Chen, S.H., Chuang, C.H., Chou, T.H., Ko, C.F., Chou, P.H., Liu, C.T., and Shih, Y.H. (2021).
\n The degradation mechanisms of Rhodopseudomonas palustris toward hexabromocyclododecane by time-course transcriptome analysis.
\nChem Eng J 425, ARTN 130489
\nhttps:\/\/doi.org\/10.1016\/j.cej.2021.130489.<\/a><\/td>\n<\/tr>\n
Lin, H.C., Wong, Y.H., Sung, C.H., and Chan, B.K.K. (2021).
\n Histology and transcriptomic analyses of barnacles with different base materials and habitats shed lights on the duplication and chemical diversification of barnacle cement proteins.
\nBMC Genomics 22, 783, DOI: 10.1186\/s12864-021-08049-4.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34724896.<\/a><\/td>\n<\/tr>\n
Huang, T.H., and Suen, D.F. (2021).
\n Iron insufficiency in floral buds impairs pollen development by disrupting tapetum function.
\nPlant J 108, 244-267, DOI: 10.1111\/tpj.15438.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34310779.<\/a><\/td>\n<\/tr>\n
Machida, R.J., Kurihara, H., Nakajima, R., Sakamaki, T., Lin, Y.Y., and Furusawa, K. (2021).
\n Comparative analysis of zooplankton diversities and compositions estimated from complement DNA and genomic DNA amplicons, metatranscriptomics, and morphological identifications.
\nIces J Mar Sci 78, 3428-3443, DOI: 10.1093\/icesjms\/fsab084.
\n https:\/\/www.webofscience.com\/wos\/woscc\/full-record\/WOS:000743803900029.<\/a><\/td>\n<\/tr>\n
Huang, Y.S., Lin, C.Y., and Cheng, W.C. (2021).
\n Investigating the Transcriptomic and Expression Presence-Absence Variation Exist in Japanese Eel (Anguilla japonica), a Primitive Teleost.
\nMar Biotechnol (NY) 23, 943-954, DOI: 10.1007\/s10126-021-10077-w.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34714446.<\/a><\/td>\n<\/tr>\n
Chan, T.C., Chen, Y.T., Tan, K.T., Wu, C.L., Wu, W.J., Li, W.M., Wang, J.M., Shiue, Y.L., and Li, C.F. (2021).
\n Biological significance of MYC and CEBPD coamplification in urothelial carcinoma: Multilayered genomic, transcriptional and posttranscriptional positive feedback loops enhance oncogenic glycolysis.
\nClin Transl Med 11, e674, DOI: 10.1002\/ctm2.674.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34954904.<\/a><\/td>\n<\/tr>\n
Hsieh, C.L., Yu, C.C., Huang, Y.L., and Chung, K.F. (2021).
\n Mahonia vs. Berberis Unloaded: Generic Delimitation and Infrafamilial Classification of Berberidaceae Based on Plastid Phylogenomics.
\nFront Plant Sci 12, 720171, DOI: 10.3389\/fpls.2021.720171.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/35069611.<\/a><\/td>\n<\/tr>\n
Chuang, W.-H., Cheng, H.-C., Chang, Y.-J., Fu, P.-Y., Huang, Y.-C., Hsieha, P.-H., Chen, S.-H., Lina, C.-Y., and Ho, J.-M. (2021).
\n GABOLA: A Reliable Gap-Filling Strategy for de novo<\/em> Chromosome-Level Assembly.
\nbioRxiv, 2021.2009.2007.459217, DOI: 10.1101\/2021.09.07.459217.
\n https:\/\/www.biorxiv.org\/content\/biorxiv\/early\/2021\/09\/08\/2021.09.07.459217.full.pdf.<\/a><\/td>\n<\/tr>\n
Lee, T.J., Liu, Y.-C., Liu, W.-A., Lin, Y.-F., Lee, H.-H., Ke, H.-M., Huang, J.-P., Lu, M.-Y.J., Hsieh, C.-L., Chung, K.-F., et al. (2021).
\n Deep sampling of ancestral genetic diversity reveals Saccharomyces cerevisiae<\/em> pre-domestication life histories.
\nbioRxiv, 2021.2009.2007.459046, DOI: 10.1101\/2021.09.07.459046.
\n https:\/\/www.biorxiv.org\/content\/biorxiv\/early\/2021\/09\/08\/2021.09.07.459046.full.pdf.<\/a><\/td>\n<\/tr>\n
Fan, W.L., Yang, L.Y., Hsieh, J.C., Lin, T.C., Lu, M.J., and Liao, C.T. (2021).
\n Prognostic Genetic Biomarkers Based on Oncogenic Signaling Pathways for Outcome Prediction in Patients with Oral Cavity Squamous Cell Carcinoma.
\nCancers (Basel) 13, 10.3390\/cancers13112709.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/34070941.<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

2020<\/span><\/strong><\/h1>\n\n\n\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t
Shen, Y.C., Hsu, C.L., Jeng, Y.M., Ho, M.C., Ho, C.M., Yeh, C.P., Yeh, C.Y., Hsu, M.C., Hu, R.H., and Cheng, A.L. (2020).
\n Reliability of a single-region sample to evaluate tumor immune microenvironment in hepatocellular carcinoma.
\nJ Hepatol 72, 489-497, DOI: 10.1016\/j.jhep.2019.09.032.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31634533.<\/a><\/td>\n<\/tr>\n
Fontana, S., Chang, N.C., Chang, T., Lee, C.C., Dang, V.D., and Wang, J. (2020).
\n The fire ant social supergene is characterized by extensive gene and transposable element copy number variation.
\nMolecular Ecology 29, 105-120, DOI: 10.1111\/mec.15308.
\n https:\/\/www.webofscience.com\/wos\/woscc\/full-record\/WOS:000499403800001.<\/a><\/td>\n<\/tr>\n
Wang, P.H., Chen, Y.L., Wei, S.T., Wu, K., Lee, T.H., Wu, T.Y., and Chiang, Y.R. (2020).
\n Retroconversion of estrogens into androgens by bacteria via a cobalamin-mediated methylation.
\nProc Natl Acad Sci U S A 117, 1395-1403, DOI: 10.1073\/pnas.1914380117.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31848239.<\/a><\/td>\n<\/tr>\n
Cheng, Y.I., Chou, L., Chiu, Y.F., Hsueh, H.T., Kuo, C.H., and Chu, H.A. (2020).
\n Comparative Genomic Analysis of a Novel Strain of Taiwan Hot-Spring Cyanobacterium Thermosynechococcus sp. CL-1.
\nFront Microbiol 11, 82, DOI: 10.3389\/fmicb.2020.00082.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32082292.<\/a><\/td>\n<\/tr>\n
Lin, K.Y., Wang, W.D., Lin, C.H., Rastegari, E., Su, Y.H., Chang, Y.T., Liao, Y.F., Chang, Y.C., Pi, H., Yu, B.Y., et al. (2020).
\n Piwi reduction in the aged niche eliminates germline stem cells via Toll-GSK3 signaling.
\nNat Commun 11, 3147, DOI: 10.1038\/s41467-020-16858-6.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32561720.<\/a><\/td>\n<\/tr>\n
Leu, J.Y., Chang, S.L., Chao, J.C., Woods, L.C., and McDonald, M.J. (2020).
\n Sex alters molecular evolution in diploid experimental populations of S. cerevisiae.
\nNat Ecol Evol 4, 453-460, DOI: 10.1038\/s41559-020-1101-1.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32042122.<\/a><\/td>\n<\/tr>\n
Wang, W.F., Lu, M.J., Cheng, T.R., Tang, Y.C., Teng, Y.C., Hwa, T.Y., Chen, Y.H., Li, M.Y., Wu, M.H., Chuang, P.C., et al. (2020).
\n Genomic Analysis of Mycobacterium tuberculosis Isolates and Construction of a Beijing Lineage Reference Genome.
\nGenome Biol Evol 12, 3890-3905, DOI: 10.1093\/gbe\/evaa009.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31971587.<\/a><\/td>\n<\/tr>\n
Chang, C.Y., Hung, J.H., Huang, L.W., Li, J., Fung, K.S., Kao, C.F., and Chen, L. (2020).
\n Epigenetic Regulation of WNT3A Enhancer during Regeneration of Injured Cortical Neurons.
\nInt J Mol Sci 21, DOI: 10.3390\/ijms21051891.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32164275.<\/a><\/td>\n<\/tr>\n
Vu, T.D., Iwasaki, Y., Shigenobu, S., Maruko, A., Oshima, K., Iioka, E., Huang, C.L., Abe, T., Tamaki, S., Lin, Y.W., et al. (2020).
\n Behavioral and brain- transcriptomic synchronization between the two opponents of a fighting pair of the fish Betta splendens.
\nPlos Genet 16, e1008831, DOI: 10.1371\/journal.pgen.1008831.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32555673.<\/a><\/td>\n<\/tr>\n
Liu, W.Y., Lin, H.H., Yu, C.P., Chang, C.K., Chen, H.J., Lin, J.J., Lu, M.J., Tu, S.L., Shiu, S.H., Wu, S.H., et al. (2020).
\n Maize ANT1 modulates vascular development, chloroplast development, photosynthesis, and plant growth.
\nProc Natl Acad Sci U S A 117, 21747-21756, DOI: 10.1073\/pnas.2012245117.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32817425.<\/a><\/td>\n<\/tr>\n
Chen, F.Y., Jung, H.W., Tsuei, C.Y., and Liao, J.C. (2020).
\n Converting Escherichia coli to a Synthetic Methylotroph Growing Solely on Methanol.
\nCell 182, 933-946 e914, DOI: 10.1016\/j.cell.2020.07.010.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32780992.<\/a><\/td>\n<\/tr>\n
Chen, C.Y., Chen, C.K., Chen, Y.Y., Fang, A., Shaw, G.T., Hung, C.M., and Wang, D. (2020).
\n Maternal gut microbes shape the early-life assembly of gut microbiota in passerine chicks via nests.
\nMicrobiome 8, 129, DOI: 10.1186\/s40168-020-00896-9.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32917256.<\/a><\/td>\n<\/tr>\n
Tandon, K., Lu, C.Y., Chiang, P.W., Wada, N., Yang, S.H., Chan, Y.F., Chen, P.Y., Chang, H.Y., Chiou, Y.J., Chou, M.S., et al. (2020).
\n Comparative genomics: Dominant coral-bacterium Endozoicomonas acroporae metabolizes dimethylsulfoniopropionate (DMSP).
\nISME J 14, 1290-1303, DOI: 10.1038\/s41396-020-0610-x.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32055028.<\/a><\/td>\n<\/tr>\n
Brandon-Mong, G.J., Shaw, G.T., Chen, W.H., Chen, C.C., and Wang, D. (2020).
\n A network approach to investigating the key microbes and stability of gut microbial communities in a mouse neuropathic pain model.
\nBMC Microbiol 20, 295, DOI: 10.1186\/s12866-020-01981-7.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32998681.<\/a><\/td>\n<\/tr>\n
Yang, H.C., Chen, C.H., Wang, J.H., Liao, H.C., Yang, C.T., Chen, C.W., Lin, Y.C., Kao, C.H., Lu, M.J., and Liao, J.C. (2020).
\n Analysis of genomic distributions of SARS-CoV-2 reveals a dominant strain type with strong allelic associations.
\nProc Natl Acad Sci U S A 117, 30679-30686, DOI: 10.1073\/pnas.2007840117.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33184173.<\/a><\/td>\n<\/tr>\n
Lin, C.Y., Lu, M.J., Yue, J.X., Li, K.L., Le Petillon, Y., Yong, L.W., Chen, Y.H., Tsai, F.Y., Lyu, Y.F., Chen, C.Y., et al. (2020).
\n Molecular asymmetry in the cephalochordate embryo revealed by single-blastomere transcriptome profiling.
\nPlos Genet 16, e1009294, DOI: 10.1371\/journal.pgen.1009294.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33382716.<\/a><\/td>\n<\/tr>\n
Le, M.H., and Wang, D. (2020).
\n Structure and membership of gut microbial communities in multiple fish cryptic species under potential migratory effects.
\nSci Rep 10, 7547, DOI: 10.1038\/s41598-020-64570-8.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/32372020.<\/a><\/td>\n<\/tr>\n
Cheng, Y.H., Liu, C.J., Yu, Y.H., Jhou, Y.T., Fujishima, M., Tsai, I.J., and Leu, J.Y. (2020).
\n Genome plasticity in Paramecium bursaria revealed by population genomics.
\nBMC Biol 18, 180, DOI: 10.1186\/s12915-020-00912-2.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33250052.<\/a><\/td>\n<\/tr>\n
Liu, S.L., Chiang, Y.R., Yoon, H.S., and Fu, H.Y. (2020).
\n Comparative Genome Analysis Reveals Cyanidiococcus gen. nov., A New Extremophilic Red Algal Genus Sister to Cyanidioschyzon (Cyanidioschyzonaceae, Rhodophyta).
\nJ Phycol 56, 1428-1442, DOI: 10.1111\/jpy.13056.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33460076.<\/a><\/td>\n<\/tr>\n
Lee, C.H., Chang, H.W., Yang, C.T., Wali, N., Shie, J.J., and Hsueh, Y.P. (2020).
\n Sensory cilia as the Achilles heel of nematodes when attacked by carnivorous mushrooms.
\nP Natl Acad Sci USA 117, 6014-6022, DOI: 10.1073\/pnas.1918473117.
\n https:\/\/www.webofscience.com\/wos\/woscc\/full-record\/WOS:000520011000063.<\/a><\/td>\n<\/tr>\n
Chen, W.J., Kuo, T.Y., Chen, C.Y., Hsieh, F.C., Yang, Y.L., Liu, J.R., and Shih, M.C. (2020).
\n Whole Genome Sequencing and Tn5-Insertion Mutagenesis of Pseudomonas taiwanensis CMS to Probe Its Antagonistic Activity Against Rice Bacterial Blight Disease.
\nInt J Mol Sci 21, DOI: 10.3390\/ijms21228639.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33207795.<\/a><\/td>\n<\/tr>\n
Ke, H.-M., Lee, H.-H., Lin, C.-Y.I., Liu, Y.-C., Lu, M.R., Hsieh, J.-W.A., Chang, C.-C., Wu, P.-H., Lu, M.J., Li, J.-Y., et al. (2020).
\n Mycena genomes resolve the evolution of fungal bioluminescence.
\nProceedings of the National Academy of Sciences 117, 31267-31277, doi:10.1073\/pnas.2010761117.
\n https:\/\/www.pnas.org\/doi\/abs\/10.1073\/pnas.2010761117.<\/a><\/td>\n<\/tr>\n
An-Ting Liou, C.-H.C., Ping-Chang Lin, Yu-Chen Cheng, Ching-Yi Tsai, Wen-Chang Lin, Jeng-Yi Li, Mei-Yeh Jade Lu, Jer-Ming Chang, Shang-Jyh Hwang, Ming-Feng Hou, Inn-Wen Chong, Yuh-Jyh Jong, Jih-Jin Tsai, and Chiaho Shih (2020).
\n GISAID: EPI_ISL_4169856 (hCoV-19\/Taiwan\/KMU-1\/2020; B.1.438).
\n https:\/\/epicov.org\/epi3\/epi_set\/EPI_ISL_4169856.<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

2019<\/span><\/strong><\/h1>\n\n\n\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t
Wong, M.M., Bhaskara, G.B., Wen, T.N., Lin, W.D., Nguyen, T.T., Chong, G.L., and Verslues, P.E. (2019).
\n Phosphoproteomics of Arabidopsis Highly ABA-Induced1 identifies AT-Hook-Like10 phosphorylation required for stress growth regulation.
\nProc Natl Acad Sci U S A 116, 2354-2363, DOI: 10.1073\/pnas.1819971116.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30670655.<\/a><\/td>\n<\/tr>\n
Cho, H.Y., Lu, M.J., and Shih, M.C. (2019).
\n The SnRK1-eIFiso4G1 signaling relay regulates the translation of specific mRNAs in Arabidopsis under submergence.
\nNew Phytol 222, 366-381, DOI: 10.1111\/nph.15589.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30414328.<\/a><\/td>\n<\/tr>\n
Luciano, L.B.G., Tsai, I.J., Chuma, I., Tosa, Y., Chen, Y.H., Li, J.Y., Li, M.Y., Lu, M.Y.J., Nakayashiki, H., and Li, W.H. (2019).
\n Blast Fungal Genomes Show Frequent Chromosomal Changes, Gene Gains and Losses, and Effector Gene Turnover.
\nMol Biol Evol 36, 1148-1161, DOI: 10.1093\/molbev\/msz045.
\n https:\/\/www.webofscience.com\/wos\/woscc\/full-record\/WOS:000473587400004.<\/a><\/td>\n<\/tr>\n
Lin, S.S., Chen, Y., and Lu, M.J. (2019).
\n Degradome Sequencing in Plants.
\nMethods Mol Biol 1932, 197-213, DOI: 10.1007\/978-1-4939-9042-9_15.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30701502.<\/a><\/td>\n<\/tr>\n
Chang, Y.M., Lin, H.H., Liu, W.Y., Yu, C.P., Chen, H.J., Wartini, P.P., Kao, Y.Y., Wu, Y.H., Lin, J.J., Lu, M.J., et al. (2019).
\n Comparative transcriptomics method to infer gene coexpression networks and its applications to maize and rice leaf transcriptomes.
\nProc Natl Acad Sci U S A 116, 3091-3099, DOI: 10.1073\/pnas.1817621116.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30718437.<\/a><\/td>\n<\/tr>\n
Sung, C.M., Lin, Y.F., Chen, K.F., Ke, H.M., Huang, H.Y., Gong, Y.N., Tsai, W.S., You, J.F., Lu, M.J., Cheng, H.T., et al. (2019).
\n Predicting Clinical Outcomes of Cirrhosis Patients With Hepatic Encephalopathy From the Fecal Microbiome.
\nCell Mol Gastroenterol Hepatol 8, 301-318 e302, DOI: 10.1016\/j.jcmgh.2019.04.008.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31004827.<\/a><\/td>\n<\/tr>\n
Chien, C.C., Chou, M.Y., Chen, C.Y., and Shih, M.C. (2019).
\n Analysis of genetic diversity of Xanthomonas oryzae pv. oryzae populations in Taiwan.
\nSci Rep 9, 316, DOI: 10.1038\/s41598-018-36575-x.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30670790.<\/a><\/td>\n<\/tr>\n
Lin, C.C., Chao, Y.T., Chen, W.C., Ho, H.Y., Chou, M.Y., Li, Y.R., Wu, Y.L., Yang, H.A., Hsieh, H., Lin, C.S., et al. (2019).
\n Regulatory cascade involving transcriptional and N-end rule pathways in rice under submergence.
\nProc Natl Acad Sci U S A 116, 3300-3309, DOI: 10.1073\/pnas.1818507116.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30723146.<\/a><\/td>\n<\/tr>\n
Lin, C.Y.G., Chao, J.L., Tsai, H.K., Chalker, D., and Yao, M.C. (2019).
\n Setting boundaries for genome-wide heterochromatic DNA deletions through flanking inverted repeats in Tetrahymena thermophila.
\nNucleic Acids Research 47, 5181-5192, DOI: 10.1093\/nar\/gkz209.
\n https:\/\/www.webofscience.com\/wos\/woscc\/full-record\/WOS:000471248400028.<\/a><\/td>\n<\/tr>\n
Chong, G.L., Foo, M.H., Lin, W.D., Wong, M.M., and Verslues, P.E. (2019).
\n Highly ABA-Induced 1 (HAI1)-Interacting protein HIN1 and drought acclimation-enhanced splicing efficiency at intron retention sites.
\nP Natl Acad Sci USA 116, 22376-22385, DOI: 10.1073\/pnas.1906244116.
\n https:\/\/www.webofscience.com\/wos\/woscc\/full-record\/WOS:000493720200064.<\/a><\/td>\n<\/tr>\n
Yang, S.F., Lu, C.W., Yao, C.T., and Hung, C.M. (2019).
\n To Trim or Not to Trim: Effects of Read Trimming on the De Novo Genome Assembly of a Widespread East Asian Passerine, the Rufous-Capped Babbler (Cyanoderma ruficeps Blyth).
\nGenes (Basel) 10, DOI: 10.3390\/genes10100737.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31548511.<\/a><\/td>\n<\/tr>\n
Dang, V.D., Cohanim, A.B., Fontana, S., Privman, E., and Wang, J. (2019).
\n Has gene expression neofunctionalization in the fire ant antennae contributed to queen discrimination behavior?
\nEcol Evol 9, 12754-12766, DOI: 10.1002\/ece3.5748.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/31788211.<\/a><\/td>\n<\/tr>\n
Lin, Y.T., Lin, Y.F., Tsai, I.J., Chang, E.H., Jien, S.H., Lin, Y.J., and Chiu, C.Y. (2019).
\n Structure and Diversity of Soil Bacterial Communities in Offshore Islands.
\nSci Rep 9, 4689, DOI: 10.1038\/s41598-019-41170-9.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30894580.<\/a><\/td>\n<\/tr>\n
Lin, D.C., Huang, C.Y., Ting, W.H., Lo, F.S., Lin, C.L., Yang, H.W., Chang, T.Y., Lin, C.H., Tzeng, Y.W., Yang, W.S., et al. (2019).
\n Mutations in glucokinase and other genes detected in neonatal and type 1B diabetes patient using whole exome sequencing may lead to disease-causing changes in protein activity.
\nBba-Mol Basis Dis 1865, 428-433, 10.1016\/j.bbadis.2018.11.013.
\nhttps:\/\/pubmed.ncbi.nlm.nih.gov\/30465894\/<\/a>“<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

2018<\/span><\/strong><\/h1>\n\n\n\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t
Huang, C.J., Lu, M.Y., Chang, Y.W., and Li, W.H. (2018).
\n Experimental Evolution of Yeast for High-Temperature Tolerance.
\nMol Biol Evol 35, 1823-1839, DOI: 10.1093\/molbev\/msy077.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29684163.<\/a><\/td>\n<\/tr>\n
Chuang, T.J., Chen, Y.J., Chen, C.Y., Mai, T.L., Wang, Y.D., Yeh, C.S., Yang, M.Y., Hsiao, Y.T., Chang, T.H., Kuo, T.C., et al. (2018).
\n Integrative transcriptome sequencing reveals extensive alternative trans-splicing and cis-backsplicing in human cells.
\nNucleic Acids Res 46, 3671-3691, DOI: 10.1093\/nar\/gky032.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29385530.<\/a><\/td>\n<\/tr>\n
Chao, Y.T., Chen, W.C., Chen, C.Y., Ho, H.Y., Yeh, C.H., Kuo, Y.T., Su, C.L., Yen, S.H., Hsueh, H.Y., Yeh, J.H., et al. (2018).
\n Chromosome\u2010level assembly, genetic and physical mapping of Phalaenopsis aphrodite genome provides new insights into species adaptation and resources for orchid breeding.
\nPlant Biotechnol J 16, 2027-2041, DOI: 10.1111\/pbi.12936.
\n https:\/\/www.webofscience.com\/wos\/woscc\/full-record\/WOS:000449663300006.<\/a><\/td>\n<\/tr>\n
Grillet, L., Lan, P., Li, W.F., Mokkapati, G., and Schmidt, W. (2018).
\n IRON MAN is a ubiquitous family of peptides that control iron transport in plants.
\nNat Plants 4, 953-+, DOI: 10.1038\/s41477-018-0266-y.
\n https:\/\/www.webofscience.com\/wos\/woscc\/full-record\/WOS:000452308700022.<\/a><\/td>\n<\/tr>\n
Wei, S.T., Wu, Y.W., Lee, T.H., Huang, Y.S., Yang, C.Y., Chen, Y.L., and Chiang, Y.R. (2018).
\n Microbial Functional Responses to Cholesterol Catabolism in Denitrifying Sludge.
\nmSystems 3, DOI: 10.1128\/mSystems.00113-18.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30417110.<\/a><\/td>\n<\/tr>\n
Lee, C.Y., Hsieh, P.H., Chiang, L.M., Chattopadhyay, A., Li, K.Y., Lee, Y.F., Lu, T.P., Lai, L.C., Lin, E.C., Lee, H., et al. (2018).
\n Whole-genome sequencing reveals unique genes that contributed to the adaptive evolution of the Mikado pheasant.
\nGigascience 7, DOI: 10.1093\/gigascience\/giy044.
\n https:\/\/www.webofscience.com\/wos\/woscc\/full-record\/WOS:000438565400001.<\/a><\/td>\n<\/tr>\n
Huang, Y.C., Dang, V.D., Chang, N.C., and Wang, J. (2018).
\n Multiple large inversions and breakpoint rewiring of gene expression in the evolution of the fire ant social supergene.
\nProc Biol Sci 285, DOI: 10.1098\/rspb.2018.0221.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29769360.<\/a><\/td>\n<\/tr>\n
Lee, C.C., and Wang, J. (2018).
\n Rapid Expansion of a Highly Germline-Expressed Mariner Element Acquired by Horizontal Transfer in the Fire Ant Genome.
\nGenome Biol Evol 10, 3262-3278, DOI: 10.1093\/gbe\/evy220.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30304394.<\/a><\/td>\n<\/tr>\n
Yen, Y.P., Hsieh, W.F., Tsai, Y.Y., Lu, Y.L., Liau, E.S., Hsu, H.C., Chen, Y.C., Liu, T.C., Chang, M., Li, J., et al. (2018).
\n Dlk1-Dio3 locus-derived lncRNAs perpetuate postmitotic motor neuron cell fate and subtype identity.
\nElife 7, DOI: 10.7554\/eLife.38080.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30311912.<\/a><\/td>\n<\/tr>\n
Koubkova-Yu, T.C.T., Chao, J.C., and Leu, J.Y. (2018).
\n Heterologous Hsp90 promotes phenotypic diversity through network evolution.
\nPlos Biol 16, ARTN e2006450
\nhttps:\/\/doi.org\/10.1371\/journal.pbio.2006450<\/a><\/td>\n<\/tr>\n
Qiu, B., Larsen, R.S., Chang, N.C., Wang, J., Boomsma, J.J., and Zhang, G. (2018).
\n Towards reconstructing the ancestral brain gene-network regulating caste differentiation in ants.
\nNat Ecol Evol 2, 1782-1791, DOI: 10.1038\/s41559-018-0689-x.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/30349091.<\/a><\/td>\n<\/tr>\n
D, D., Hung, K.Y., and Tarn, W.Y. (2018).
\n RBM4 Modulates Radial Migration via Alternative Splicing of Dab1 during Cortex Development.
\nMol Cell Biol 38, DOI: 10.1128\/MCB.00007-18.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/29581187.<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

2017<\/span><\/strong><\/h1>\n\n\n\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t
Shaw, G.T., Liu, A.C., Weng, C.Y., Chou, C.Y., and Wang, D. (2017).
\n Inferring microbial interactions in thermophilic and mesophilic anaerobic digestion of hog waste.
\nPLoS One 12, e0181395, DOI: 10.1371\/journal.pone.0181395.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28732056.<\/a><\/td>\n<\/tr>\n
Chen, C.Y., Chen, P.C., Weng, F.C., Shaw, G.T., and Wang, D. (2017).
\n Habitat and indigenous gut microbes contribute to the plasticity of gut microbiome in oriental river prawn during rapid environmental change.
\nPLoS One 12, e0181427, DOI: 10.1371\/journal.pone.0181427.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28715471.<\/a><\/td>\n<\/tr>\n
Weng, F.C., Shaw, G.T., Weng, C.Y., Yang, Y.J., and Wang, D. (2017).
\n Inferring Microbial Interactions in the Gut of the Hong Kong Whipping Frog (Polypedates megacephalus) and a Validation Using Probiotics.
\nFront Microbiol 8, 525, DOI: 10.3389\/fmicb.2017.00525.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28424669.<\/a><\/td>\n<\/tr>\n
Zhou, N., Swamy, K.B., Leu, J.Y., McDonald, M.J., Galafassi, S., Compagno, C., and Piskur, J. (2017).
\n Coevolution with bacteria drives the evolution of aerobic fermentation in Lachancea kluyveri.
\nPLoS One 12, e0173318, DOI: 10.1371\/journal.pone.0173318.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28282411.<\/a><\/td>\n<\/tr>\n
Chao, Y.T., Yen, S.H., Yeh, J.H., Chen, W.C., and Shih, M.C. (2017).
\n Orchidstra 2.0-A Transcriptomics Resource for the Orchid Family.
\nPlant Cell Physiol 58, e9, DOI: 10.1093\/pcp\/pcw220.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28111366.<\/a><\/td>\n<\/tr>\n
Chung, C.L., Lee, T.J., Akiba, M., Lee, H.H., Kuo, T.H., Liu, D., Ke, H.M., Yokoi, T., Roa, M.B., Lu, M.J., et al. (2017).
\n Comparative and population genomic landscape of Phellinus noxius: A hypervariable fungus causing root rot in trees.
\nMol Ecol 26, 6301-6316, DOI: 10.1111\/mec.14359.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28926153.<\/a><\/td>\n<\/tr>\n
Chen, C.K., Yu, C.P., Li, S.C., Wu, S.M., Lu, M.J., Chen, Y.H., Chen, D.R., Ng, C.S., Ting, C.T., and Li, W.H. (2017).
\n Identification and evolutionary analysis of long non-coding RNAs in zebra finch.
\nBMC Genomics 18, 117, DOI: 10.1186\/s12864-017-3506-z.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28143393.<\/a><\/td>\n<\/tr>\n
Huang, C.F., Yu, C.P., Wu, Y.H., Lu, M.J., Tu, S.L., Wu, S.H., Shiu, S.H., Ku, M.S.B., and Li, W.H. (2017).
\n Elevated auxin biosynthesis and transport underlie high vein density in C(4) leaves.
\nProc Natl Acad Sci U S A 114, E6884-E6891, DOI: 10.1073\/pnas.1709171114.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28761000.<\/a><\/td>\n<\/tr>\n
Ke, H.M., Prachumwat, A., Yu, C.P., Yang, Y.T., Promsri, S., Liu, K.F., Lo, C.F., Lu, M.J., Lai, M.C., Tsai, I.J., and Li, W.H. (2017).
\n Comparative genomics of Vibrio campbellii strains and core species of the Vibrio Harveyi clade.
\nSci Rep 7, 41394, DOI: 10.1038\/srep41394.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28145490.<\/a><\/td>\n<\/tr>\n
Merret, R., Carpentier, M.C., Favory, J.J., Picart, C., Descombin, J., Bousquet-Antonelli, C., Tillard, P., Lejay, L., Deragon, J.M., and Charng, Y.Y. (2017).
\n Heat Shock Protein HSP101 Affects the Release of Ribosomal Protein mRNAs for Recovery after Heat Shock.
\nPlant Physiol 174, 1216-1225, DOI: 10.1104\/pp.17.00269.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28381501.<\/a><\/td>\n<\/tr>\n
Chen, Y.L., Yu, C.P., Lee, T.H., Goh, K.S., Chu, K.H., Wang, P.H., Ismail, W., Shih, C.J., and Chiang, Y.R. (2017).
\n Biochemical Mechanisms and Catabolic Enzymes Involved in Bacterial Estrogen Degradation Pathways.
\nCell Chem Biol 24, 712-724 e717, DOI: 10.1016\/j.chembiol.2017.05.012.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28552583.<\/a><\/td>\n<\/tr>\n
Shih, C.J., Chen, Y.L., Wang, C.H., Wei, S.T., Lin, I.T., Ismail, W.A., and Chiang, Y.R. (2017).
\n Biochemical Mechanisms and Microorganisms Involved in Anaerobic Testosterone Metabolism in Estuarine Sediments.
\nFront Microbiol 8, 1520, DOI: 10.3389\/fmicb.2017.01520.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28848528.<\/a><\/td>\n<\/tr>\n
Lin, C.S., Chen, J.J.W., Chiu, C.C., Hsiao, H.C.W., Yang, C.J., Jin, X.H., Leebens-Mack, J., de Pamphilis, C.W., Huang, Y.T., Yang, L.H., et al. (2017).
\n Concomitant loss of NDH complex-related genes within chloroplast and nuclear genomes in some orchids.
\nPlant J 90, 994-1006, DOI: 10.1111\/tpj.13525.
\n https:\/\/www.webofscience.com\/wos\/woscc\/full-record\/WOS:000403346500013.<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

2016<\/span><\/strong><\/h1>\n\n\n\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t
Weng, F.C., Yang, Y.J., and Wang, D. (2016).
\n Functional analysis for gut microbes of the brown tree frog (Polypedates megacephalus) in artificial hibernation.
\nBMC Genomics 17, 1024, DOI: 10.1186\/s12864-016-3318-6.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28155661.<\/a><\/td>\n<\/tr>\n
Tsai, S.Y., Chang, Y.L., Swamy, K.B., Chiang, R.L., and Huang, D.H. (2016).
\n GAGA factor, a positive regulator of global gene expression, modulates transcriptional pausing and organization of upstream nucleosomes.
\nEpigenetics Chromatin 9, 32, DOI: 10.1186\/s13072-016-0082-4.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27468311.<\/a><\/td>\n<\/tr>\n
Lee, C.C., and Wang, J. (2016).
\n The complete mitochondrial genome of Histiostoma blomquisti (Acari: Histiostomatidae).
\nMitochondrial DNA B Resour 1, 671-673, DOI: 10.1080\/23802359.2016.1219633.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/33473592.<\/a><\/td>\n<\/tr>\n
Liu, M.S., Kuo, T.C.Y., Ko, C.Y., Wu, D.C., Li, K.Y., Lin, W.J., Lin, C.P., Wang, Y.W., Schafleitner, R., Lo, H.F., et al. (2016).
\n Genomic and transcriptomic comparison of nucleotide variations for insights into bruchid resistance of mungbean ( [L.] R. Wilczek).
\nBmc Plant Biol 16, ARTN 46
\nhttps:\/\/doi.org\/10.1186\/s12870-016-0736-1.<\/a><\/td>\n<\/tr>\n
Lin, W.J., Ko, C.Y., Liu, M.S., Kuo, C.Y., Wu, D.C., Chen, C.Y., Schafleitner, R., Chen, L.F., and Lo, H.F. (2016).
\n Transcriptomic and Proteomic Research To Explore Bruchid-Resistant Genes in Mungbean Isogenic Lines.
\nJ Agric Food Chem 64, 6648-6658, DOI: 10.1021\/acs.jafc.6b03015.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27508985.<\/a><\/td>\n<\/tr>\n
Lin, C.Y.G., Lin, I.T., and Yao, M.C. (2016).
\n Programmed Minichromosome Elimination as a Mechanism for Somatic Genome Reduction in Tetrahymena thermophila.
\nPlos Genet 12, ARTN e1006403
\nhttps:\/\/doi.org\/10.1371\/journal.pgen.1006403<\/a><\/td>\n<\/tr>\n
Schafleitner, R., Huang, S.M., Chu, S.H., Yen, J.Y., Lin, C.Y., Yan, M.R., Krishnan, B., Liu, M.S., Lo, H.F., Chen, C.Y., et al. (2016).
\n Identification of single nucleotide polymorphism markers associated with resistance to bruchids (Callosobruchus spp.) in wild mungbean (Vigna radiata var. sublobata) and cultivated V. radiata through genotyping by sequencing and quantitative trait locus analysis.
\nBmc Plant Biol 16, ARTN 159
\nhttps:\/\/doi.org\/10.1186\/s12870-016-0847-8<\/a><\/td>\n<\/tr>\n
Liu, T.Y., Huang, T.K., Yang, S.Y., Hong, Y.T., Huang, S.M., Wang, F.N., Chiang, S.F., Tsai, S.Y., Lu, W.C., and Chiou, T.J. (2016).
\n Identification of plant vacuolar transporters mediating phosphate storage.
\nNat Commun 7, 11095, DOI: 10.1038\/ncomms11095.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27029856.<\/a><\/td>\n<\/tr>\n
Chen, C.K., Ng, C.S., Wu, S.M., Chen, J.J., Cheng, P.L., Wu, P., Lu, M.Y.J., Chen, D.R., Chuong, C.M., Cheng, H.C., et al. (2016).
\n Regulatory Differences in Natal Down Development between Altricial Zebra Finch and Precocial Chicken.
\nMol Biol Evol 33, 2030-2043, DOI: 10.1093\/molbev\/msw085.
\n https:\/\/www.webofscience.com\/wos\/woscc\/full-record\/WOS:000380105900012.<\/a><\/td>\n<\/tr>\n
Tsai, K.J., Lu, M.Y.J., Yang, K.J., Li, M.Y., Teng, Y.C., Chen, S., Ku, M.S.B., and Li, W.H. (2016).
\n Assembling the Setaria italica L. Beauv. genome into nine chromosomes and insights into regions affecting growth and drought tolerance.
\nSci Rep-Uk 6, ARTN 35076
\nhttps:\/\/doi.org\/10.1038\/srep35076<\/a><\/td>\n<\/tr>\n
Yang, F.C., Chen, Y.L., Tang, S.L., Yu, C.P., Wang, P.H., Ismail, W., Wang, C.H., Ding, J.Y., Yang, C.Y., Yang, C.Y., and Chiang, Y.R. (2016).
\n Integrated multi-omics analyses reveal the biochemical mechanisms and phylogenetic relevance of anaerobic androgen biodegradation in the environment.
\nISME J 10, 1967-1983, DOI: 10.1038\/ismej.2015.255.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26872041.<\/a><\/td>\n<\/tr>\n
Chen, Y.L., Wang, C.H., Yang, F.C., Ismail, W., Wang, P.H., Shih, C.J., Wu, Y.C., and Chiang, Y.R. (2016).
\n Identification of Comamonas testosteroni as an androgen degrader in sewage.
\nSci Rep-Uk 6, ARTN 35386
\nhttps:\/\/doi.org\/10.1038\/srep35386<\/a><\/td>\n<\/tr>\n
Feng, Y.L., Wicke, S., Li, J.W., Han, Y., Lin, C.S., Li, D.Z., Zhou, T.T., Huang, W.C., Huang, L.Q., and Jin, X.H. (2016).
\n Lineage-Specific Reductions of Plastid Genomes in an Orchid Tribe with Partially and Fully Mycoheterotrophic Species.
\nGenome Biol Evol 8, 2164-2175, DOI: 10.1093\/gbe\/evw144.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27412609.<\/a><\/td>\n<\/tr>\n
Huang, Y.C., Lee, C.C., Kao, C.Y., Chang, N.C., Lin, C.C., Shoemaker, D., and Wang, J. (2016).
\n Evolution of long centromeres in fire ants.
\nBMC Evol Biol 16, 189, DOI: 10.1186\/s12862-016-0760-7.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27628313.<\/a><\/td>\n<\/tr>\n
Shinde, S., Villamor, J.G., Lin, W., Sharma, S., and Verslues, P.E. (2016).
\n Proline Coordination with Fatty Acid Synthesis and Redox Metabolism of Chloroplast and Mitochondria.
\nPlant Physiol 172, 1074-1088, DOI: 10.1104\/pp.16.01097.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/27512016.<\/a><\/td>\n<\/tr>\n
Cheng, C.Y., Young, J.M., Lin, C.G., Chao, J.L., Malik, H.S., and Yao, M.C. (2016).
\n The piggyBac transposon-derived genes TPB1 and TPB6 mediate essential transposon-like excision during the developmental rearrangement of key genes in Tetrahymena thermophila.
\nGenes Dev 30, 2724-2736, DOI: 10.1101\/gad.290460.116.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/28087716.<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

2015<\/span><\/strong><\/h1>\n\n\n\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t
Hsu, H.Y., Chen, S.H., Cha, Y.R., Tsukamoto, K., Lin, C.Y., and Han, Y.S. (2015).
\n De Novo Assembly of the Whole Transcriptome of the Wild Embryo, Preleptocephalus, Leptocephalus, and Glass Eel of Anguilla japonica and Deciphering the Digestive and Absorptive Capacities during Early Development.
\nPLoS One 10, e0139105, DOI: 10.1371\/journal.pone.0139105.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26406914.<\/a><\/td>\n<\/tr>\n
Tzeng, T.D., Pao, Y.Y., Chen, P.C., Weng, F.C., Jean, W.D., and Wang, D. (2015).
\n Effects of Host Phylogeny and Habitats on Gut Microbiomes of Oriental River Prawn (Macrobrachium nipponense).
\nPLoS One 10, e0132860, DOI: 10.1371\/journal.pone.0132860.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26168244.<\/a><\/td>\n<\/tr>\n
Yu, C.P., Chen, S.C.C., Chang, Y.M., Liu, W.Y., Lin, H.H., Lin, J.J., Chen, H.J., Lu, Y.J., Wu, Y.H., Lu, M.Y.J., et al. (2015).
\n Transcriptome dynamics of developing maize leaves and genomewide prediction of cis elements and their cognate transcription factors.
\nP Natl Acad Sci USA 112, E2477-E2486, DOI: 10.1073\/pnas.1500605112.
\n https:\/\/www.webofscience.com\/wos\/woscc\/full-record\/WOS:000354390600013.<\/a><\/td>\n<\/tr>\n
Chuang, Y.C., Li, W.C., Chen, C.L., Hsu, P.W., Tung, S.Y., Kuo, H.C., Schmoll, M., and Wang, T.F. (2015).
\n Trichoderma reesei meiosis generates segmentally aneuploid progeny with higher xylanase-producing capability.
\nBiotechnol Biofuels 8, 30, DOI: 10.1186\/s13068-015-0202-6.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25729429.<\/a><\/td>\n<\/tr>\n
Shiao, M.S., Chang, J.M., Fan, W.L., Lu, M.Y.J., Notredame, C., Fang, S., Kondo, R., and Li, W.H. (2015).
\n Expression Divergence of Chemosensory Genes between and Its Sibling Species and Its Implications for Host Shift.
\nGenome Biology and Evolution 7, 2843-2858, DOI: 10.1093\/gbe\/evv183.
\n https:\/\/www.webofscience.com\/wos\/woscc\/full-record\/WOS:000364951100004.<\/a><\/td>\n<\/tr>\n
Lin, C.S., Chen, J.J., Huang, Y.T., Chan, M.T., Daniell, H., Chang, W.J., Hsu, C.T., Liao, D.C., Wu, F.H., Lin, S.Y., et al. (2015).
\n The location and translocation of ndh genes of chloroplast origin in the Orchidaceae family.
\nSci Rep 5, 9040, DOI: 10.1038\/srep09040.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25761566.<\/a><\/td>\n<\/tr>\n
Ruhlman, T.A., Chang, W.J., Chen, J.J., Huang, Y.T., Chan, M.T., Zhang, J., Liao, D.C., Blazier, J.C., Jin, X., Shih, M.C., et al. (2015).
\n NDH expression marks major transitions in plant evolution and reveals coordinate intracellular gene loss.
\nBmc Plant Biol 15, 100, DOI: 10.1186\/s12870-015-0484-7.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25886915.<\/a><\/td>\n<\/tr>\n
Ng, C.S., Chen, C.K., Fan, W.L., Wu, P., Wu, S.M., Chen, J.J., Lai, Y.T., Mao, C.T., Lu, M.Y., Chen, D.R., et al. (2015).
\n Transcriptomic analyses of regenerating adult feathers in chicken.
\nBMC Genomics 16, 756, DOI: 10.1186\/s12864-015-1966-6.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/26445093.<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

2014<\/span><\/strong><\/h1>\n\n\n\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t
Wu, C.S., Yu, C.Y., Chuang, C.Y., Hsiao, M., Kao, C.F., Kuo, H.C., and Chuang, T.J. (2014).
\n Integrative transcriptome sequencing identifies trans-splicing events with important roles in human embryonic stem cell pluripotency.
\nGenome Research 24, 25-36, DOI: 10.1101\/gr.159483.113.
\n https:\/\/www.webofscience.com\/wos\/woscc\/full-record\/WOS:000329163500003.<\/a><\/td>\n<\/tr>\n
Swamy, K.B., Lin, C.H., Yen, M.R., Wang, C.Y., and Wang, D. (2014).
\n Examining the condition-specific antisense transcription in S. cerevisiae and S. paradoxus.
\nBMC Genomics 15, 521, DOI: 10.1186\/1471-2164-15-521.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24965678.<\/a><\/td>\n<\/tr>\n
Machida, R.J., and Lin, Y.Y. (2014).
\n Four methods of preparing mRNA 5′ end libraries using the Illumina sequencing platform.
\nPLoS One 9, e101812, DOI: 10.1371\/journal.pone.0101812.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25003736.<\/a><\/td>\n<\/tr>\n
Chao, Y.T., Su, C.L., Jean, W.H., Chen, W.C., Chang, Y.C., and Shih, M.C. (2014).
\n Identification and characterization of the microRNA transcriptome of a moth orchid Phalaenopsis aphrodite.
\nPlant Mol Biol 84, 529-548, DOI: 10.1007\/s11103-013-0150-0.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24173913.<\/a><\/td>\n<\/tr>\n
Sasaki, E., Zhang, X., Sun, H.G., Lu, M.Y., Liu, T.L., Ou, A., Li, J.Y., Chen, Y.H., Ealick, S.E., and Liu, H.W. (2014).
\n Co-opting sulphur-carrier proteins from primary metabolic pathways for 2-thiosugar biosynthesis.
\nNature 510, 427-431, DOI: 10.1038\/nature13256.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24814342.<\/a><\/td>\n<\/tr>\n
Lu, M.Y., Fan, W.L., Wang, W.F., Chen, T., Tang, Y.C., Chu, F.H., Chang, T.T., Wang, S.Y., Li, M.Y., Chen, Y.H., et al. (2014).
\n Genomic and transcriptomic analyses of the medicinal fungus Antrodia cinnamomea for its metabolite biosynthesis and sexual development.
\nProc Natl Acad Sci U S A 111, E4743-4752, DOI: 10.1073\/pnas.1417570111.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25336756.<\/a><\/td>\n<\/tr>\n
Ng, C.S., Wu, P., Fan, W.L., Yan, J., Chen, C.K., Lai, Y.T., Wu, S.M., Mao, C.T., Chen, J.J., Lu, M.Y., et al. (2014).
\n Genomic organization, transcriptomic analysis, and functional characterization of avian alpha- and beta-keratins in diverse feather forms.
\nGenome Biol Evol 6, 2258-2273, DOI: 10.1093\/gbe\/evu181.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25152353.<\/a><\/td>\n<\/tr>\n
Shih, M.C., Chou, M.L., Yue, J.J., Hsu, C.T., Chang, W.J., Ko, S.S., Liao, D.C., Huang, Y.T., Chen, J.J.W., Yuan, J.L., et al. (2014).
\n BeMADS1 is a key to delivery MADSs into nucleus in reproductive tissues-De novo characterization of Bambusa edulis transcriptome and study of MADS genes in bamboo floral development.
\nBmc Plant Biol 14, Artn 179
\nhttps:\/\/doi.org\/10.1186\/1471-2229-14-179.<\/a><\/td>\n<\/tr>\n
Chang, T.H., Lo, W.S., Ku, C., Chen, L.L., and Kuo, C.H. (2014).
\n Molecular evolution of the substrate utilization strategies and putative virulence factors in mosquito-associated Spiroplasma species.
\nGenome Biol Evol 6, 500-509, DOI: 10.1093\/gbe\/evu033.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/24534435.<\/a><\/td>\n<\/tr>\n
Lo, W.S., Chen, H., Chen, C.Y., and Kuo, C.H. (2014).
\n Complete Genome Sequence of Vibrio vulnificus 93U204, a Bacterium Isolated from Diseased Tilapia in Taiwan.
\nGenome Announc 2, DOI: 10.1128\/genomeA.01005-14.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/25278541.<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

2013<\/span><\/strong><\/h1>\n\n\n\n\t\n\t\n\t\n\t\n\t\n\t\n\t\n\t
Lin, C.H., Tsai, Z.T.Y., and Wang, D.Y. (2013).
\n Role of antisense RNAs in evolution of yeast regulatory complexity.
\nGenomics 102, 484-490, DOI: 10.1016\/j.ygeno.2013.10.008.
\n https:\/\/www.webofscience.com\/wos\/woscc\/full-record\/WOS:000328914500008.<\/a><\/td>\n<\/tr>\n
Wang, J., Wurm, Y., Nipitwattanaphon, M., Riba-Grognuz, O., Huang, Y.C., Shoemaker, D., and Keller, L. (2013).
\n A Y-like social chromosome causes alternative colony organization in fire ants.
\nNature 493, 664-668, DOI: 10.1038\/nature11832.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23334415.<\/a><\/td>\n<\/tr>\n
Su, C.L., Chao, Y.T., Yen, S.H., Chen, C.Y., Chen, W.C., Chang, Y.C., and Shih, M.C. (2013).
\n Orchidstra: an integrated orchid functional genomics database.
\nPlant Cell Physiol 54, e11, DOI: 10.1093\/pcp\/pct004.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23324169.<\/a><\/td>\n<\/tr>\n
Liu, W.Y., Chang, Y.M., Chen, S.C., Lu, C.H., Wu, Y.H., Lu, M.Y., Chen, D.R., Shih, A.C., Sheue, C.R., Huang, H.C., et al. (2013).
\nAnatomical and transcriptional dynamics of maize embryonic leaves during seed germination.
\nProc Natl Acad Sci U S A 110, 3979-3984, DOI: 10.1073\/pnas.1301009110.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23431200.<\/a><\/td>\n<\/tr>\n
Fan, W.L., Ng, C.S., Chen, C.F., Lu, M.Y., Chen, Y.H., Liu, C.J., Wu, S.M., Chen, C.K., Chen, J.J., Mao, C.T., et al. (2013).
\n Genome-wide patterns of genetic variation in two domestic chickens.
\nGenome Biol Evol 5, 1376-1392, DOI: 10.1093\/gbe\/evt097.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23814129.<\/a><\/td>\n<\/tr>\n
Shiao, M.S., Fan, W.L., Fang, S., Lu, M.Y.J., Kondo, R., and Li, W.H. (2013).
\n Transcriptional profiling of adult antennae by high-throughput sequencing.
\nZool Stud 52, Artn 42
\nhttps:\/\/zoologicalstudies.springeropen.com\/articles\/10.1186\/1810-522x-52-42.<\/a><\/td>\n<\/tr>\n
Chou, M.L., Shih, M.C., Chan, M.T., Liao, S.Y., Hsu, C.T., Haung, Y.T., Chen, J.J.W., Liao, D.C., Wu, F.H., and Lin, C.S. (2013).
\n Global transcriptome analysis and identification of a CONSTANS-like gene family in the orchid.
\nPlanta 237, 1425-1441, DOI: 10.1007\/s00425-013-1850-z.
\n https:\/\/www.webofscience.com\/wos\/woscc\/full-record\/WOS:000319474200002.<\/a><\/td>\n<\/tr>\n
Schaefke, B., Emerson, J.J., Wang, T.Y., Lu, M.Y., Hsieh, L.C., and Li, W.H. (2013).
\n Inheritance of gene expression level and selective constraints on trans- and cis-regulatory changes in yeast.
\nMol Biol Evol 30, 2121-2133, DOI: 10.1093\/molbev\/mst114.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/23793114.<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

2012<\/span><\/strong><\/h1>\n\n\n\n\t\n\t\n\t\n\t
Chen, H.L., Chen, Y.C., Lu, M.J., Chang, J.J., Wang, H.C., Ke, H.M., Wang, T.Y., Ruan, S.K., Wang, T.Y., Hung, K.Y., et al. (2012).
\nA highly efficient beta-glucosidase from the buffalo rumen fungus Neocallimastix patriciarum W5.
\nBiotechnol Biofuels 5, 24, DOI: 10.1186\/1754-6834-5-24.
\nhttps:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22515264.<\/a><\/td>\n<\/tr>\n
Pan, I.C., Liao, D.C., Wu, F.H., Daniell, H., Singh, N.D., Chang, C., Shih, M.C., Chan, M.T., and Lin, C.S. (2012).
\nComplete chloroplast genome sequence of an orchid model plant candidate: Erycina pusilla apply in tropical Oncidium breeding.
\nPLoS One 7, e34738, DOI: 10.1371\/journal.pone.0034738.
\nhttps:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22496851.<\/a><\/td>\n<\/tr>\n
Shiao, M.S., Chang, A.Y., Liao, B.Y., Ching, Y.H., Lu, M.Y., Chen, S.M., and Li, W.H. (2012).
\n Transcriptomes of mouse olfactory epithelium reveal sexual differences in odorant detection.
\nGenome Biol Evol 4, 703-712, DOI: 10.1093\/gbe\/evs039.
\n https:\/\/www.ncbi.nlm.nih.gov\/pubmed\/22511034.<\/a><\/td>\n<\/tr>\n
Chang, Y.M., Liu, W.Y., Shih, A.C.C., Shen, M.N., Lu, C.H., Lu, M.Y.J., Yang, H.W., Wang, T.Y., Chen, S.C.C., Chen, S.M., et al. (2012).
\n Characterizing Regulatory and Functional Differentiation between Maize Mesophyll and Bundle Sheath Cells by Transcriptomic Analysis.
\nPlant Physiol 160, 165-177, DOI: 10.1104\/pp.112.203810.
\n https:\/\/www.webofscience.com\/wos\/woscc\/full-record\/WOS:000308675100017.<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

2011<\/span><\/strong><\/h1>\n\n\n\n\t\n\t
Su, C.L., Chao, Y.T., Alex Chang, Y.C., Chen, W.C., Chen, C.Y., Lee, A.Y., Hwa, K.T., and Shih, M.C. (2011).
\nDe novo assembly of expressed transcripts and global analysis of the Phalaenopsis aphrodite transcriptome.
\nPlant Cell Physiol 52, 1501-1514, DOI: 10.1093\/pcp\/pcr097.
\nhttps:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21771864.<\/a>
\n<\/td>\n<\/tr>\n
Wang, T.Y., Chen, H.L., Lu, M.J., Chen, Y.C., Sung, H.M., Mao, C.T., Cho, H.Y., Ke, H.M., Hwa, T.Y., Ruan, S.K., et al. (2011).
\nFunctional characterization of cellulases identified from the cow rumen fungus Neocallimastix patriciarum W5 by transcriptomic and secretomic analyses.
\nBiotechnol Biofuels 4, 24, DOI: 10.1186\/1754-6834-4-24.
\nhttps:\/\/www.ncbi.nlm.nih.gov\/pubmed\/21849025.<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

2010<\/span><\/strong><\/h1>\n\n\n\n\t
Emerson, J.J., Hsieh, L.C., Sung, H.M., Wang, T.Y., Huang, C.J., Lu, H.H., Lu, M.Y., Wu, S.H., and Li, W.H. (2010).
\nNatural selection on cis and trans regulation in yeasts.
\nGenome Res 20, 826-836, DOI: 10.1101\/gr.101576.109.
\nhttps:\/\/www.ncbi.nlm.nih.gov\/pubmed\/20445163.<\/a><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<\/div>\n\t\t","protected":false},"excerpt":{"rendered":"

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